Tsjerk Wassenaar
Tsjerk Wassenaar
gastonderzoeker RuG
Geverifieerd e-mailadres voor rug.nl
Geciteerd door
Geciteerd door
Improved parameters for the martini coarse-grained protein force field
DH de Jong, G Singh, WFD Bennett, C Arnarez, TA Wassenaar, ...
Journal of chemical theory and computation 9 (1), 687-697, 2013
HADDOCK versus HADDOCK: new features and performance of HADDOCK2. 0 on the CAPRI targets
SJ De Vries, ADJ Van Dijk, M Krzeminski, M van Dijk, A Thureau, V Hsu, ...
Proteins: structure, function, and bioinformatics 69 (4), 726-733, 2007
Lipid organization of the plasma membrane
HI Ingˇlfsson, MN Melo, FJ Van Eerden, C Arnarez, CA Lopez, ...
Journal of the american chemical society 136 (41), 14554-14559, 2014
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
TA Wassenaar, HI Ingˇlfsson, RA Böckmann, DP Tieleman, SJ Marrink
Journal of chemical theory and computation 11 (5), 2144-2155, 2015
Going backward: a flexible geometric approach to reverse transformation from coarse grained to atomistic models
TA Wassenaar, K Pluhackova, RA Böckmann, SJ Marrink, DP Tieleman
Journal of chemical theory and computation 10 (2), 676-690, 2014
WeNMR: structural biology on the grid
TA Wassenaar, M Van Dijk, N Loureiro-Ferreira, G Van Der Schot, ...
Journal of Grid Computing 10 (4), 743-767, 2012
Mixing MARTINI: electrostatic coupling in hybrid atomistic–coarse-grained biomolecular simulations
TA Wassenaar, HI Ingólfsson, M Prie▀, SJ Marrink, LV Schäfer
The Journal of Physical Chemistry B 117 (13), 3516-3530, 2013
Characterization of thylakoid lipid membranes from cyanobacteria and higher plants by molecular dynamics simulations
FJ van Eerden, DH de Jong, AH de Vries, TA Wassenaar, SJ Marrink
Biochimica et Biophysica Acta (BBA)-Biomembranes 1848 (6), 1319-1330, 2015
Lipid–protein interactions are unique fingerprints for membrane proteins
V Corradi, E Mendez-Villuendas, HI Ingólfsson, RX Gu, I Siuda, MN Melo, ...
ACS central science 4 (6), 709-717, 2018
High-throughput simulations of dimer and trimer assembly of membrane proteins. The DAFT approach
TA Wassenaar, K Pluhackova, A Moussatova, D Sengupta, SJ Marrink, ...
Journal of chemical theory and computation 11 (5), 2278-2291, 2015
Dynamic cholesterol-conditioned dimerization of the G protein coupled chemokine receptor type 4
K Pluhackova, S Gahbauer, F Kranz, TA Wassenaar, RA B÷ckmann
PLoS computational biology 12 (11), e1005169, 2016
Activation of the bacterial thermosensor DesK involves a serine zipper dimerization motif that is modulated by bilayer thickness
LE Cybulski, J Ballering, A Moussatova, ME Inda, DB Vazquez, ...
Proceedings of the National Academy of Sciences 112 (20), 6353-6358, 2015
Nucleobase-functionalized graphene nanoribbons for accurate high-speed DNA sequencing
E Paulechka, TA Wassenaar, K Kroenlein, A Kazakov, A Smolyanitsky
Nanoscale 8 (4), 1861-1867, 2016
X-ray structure, thermodynamics, elastic properties and MD simulations of cardiolipin/dimyristoylphosphatidylcholine mixed membranes
AL Boscia, BW Treece, D Mohammadyani, J Klein-Seetharaman, ...
Chemistry and physics of lipids 178, 1-10, 2014
The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditions
TA Wassenaar, AE Mark
Journal of computational chemistry 27 (3), 316-325, 2006
A flexible, grid-enabled web portal for GROMACS molecular dynamics simulations
M van Dijk, TA Wassenaar, AMJJ Bonvin
Journal of Chemical theory and Computation 8 (10), 3463-3472, 2012
A MoS2-Based Capacitive Displacement Sensor for DNA Sequencing
A Smolyanitsky, BI Yakobson, TA Wassenaar, E Paulechka, K Kroenlein
ACS nano 10 (9), 9009-9016, 2016
How sensitive are nanosecond molecular dynamics simulations of proteins to changes in the force field?
A Villa, H Fan, T Wassenaar, AE Mark
The Journal of Physical Chemistry B 111 (21), 6015-6025, 2007
Spontaneous adsorption of coiled-coil model peptides K and E to a mixed lipid bilayer
K Pluhackova, TA Wassenaar, S Kirsch, RA Böckmann
The Journal of Physical Chemistry B 119 (12), 4396-4408, 2015
The eNMR platform for structural biology
AMJJ Bonvin, A Rosato, TA Wassenaar
Journal of structural and functional genomics 11 (1), 1-8, 2010
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