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Mark Transtrum
Mark Transtrum
Associate Professor of Physics at Brigham Young University
Verified email at byu.edu - Homepage
Title
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Cited by
Year
Perspective: Sloppiness and emergent theories in physics, biology, and beyond
MK Transtrum, BB Machta, KS Brown, BC Daniels, CR Myers, JP Sethna
The Journal of chemical physics 143 (1), 2015
3792015
Parameter space compression underlies emergent theories and predictive models
BB Machta, R Chachra, MK Transtrum, JP Sethna
Science 342 (6158), 604-607, 2013
3432013
Improvements to the Levenberg-Marquardt algorithm for nonlinear least-squares minimization
MK Transtrum, JP Sethna
arXiv preprint arXiv:1201.5885, 2012
2772012
Geometry of nonlinear least squares with applications to sloppy models and optimization
MK Transtrum, BB Machta, JP Sethna
Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 83 (3 …, 2011
2682011
Why are nonlinear fits to data so challenging?
MK Transtrum, BB Machta, JP Sethna
Physical review letters 104 (6), 060201, 2010
2402010
Model reduction by manifold boundaries
MK Transtrum, P Qiu
Physical review letters 113 (9), 098701, 2014
1482014
Superheating field of superconductors within Ginzburg-Landau theory
MK Transtrum, G Catelani, JP Sethna
Physical Review B—Condensed Matter and Materials Physics 83 (9), 094505, 2011
1242011
Bridging mechanistic and phenomenological models of complex biological systems
MK Transtrum, P Qiu
PLoS computational biology 12 (5), e1004915, 2016
902016
Mechanisms of in vivo ribosome maintenance change in response to nutrient signals
AD Mathis, BC Naylor, RH Carson, E Evans, J Harwell, J Knecht, ...
Molecular & Cellular Proteomics 16 (2), 243-254, 2017
892017
Theoretical estimates of maximum fields in superconducting resonant radio frequency cavities: stability theory, disorder, and laminates
DB Liarte, S Posen, MK Transtrum, G Catelani, M Liepe, JP Sethna
Superconductor Science and Technology 30 (3), 033002, 2017
842017
The limitations of model-based experimental design and parameter estimation in sloppy systems
A White, M Tolman, HD Thames, HR Withers, KA Mason, MK Transtrum
PLoS computational biology 12 (12), e1005227, 2016
762016
Maximizing the information learned from finite data selects a simple model
HH Mattingly, MK Transtrum, MC Abbott, BB Machta
Proceedings of the National Academy of Sciences 115 (8), 1760-1765, 2018
602018
Enzyme kinetics determined by single-injection isothermal titration calorimetry
MK Transtrum, LD Hansen, C Quinn
Methods 76, 194-200, 2015
592015
Enzyme-catalyzed and binding reaction kinetics determined by titration calorimetry
LD Hansen, MK Transtrum, C Quinn, N Demarse
Biochimica et Biophysica Acta (BBA)-General Subjects 1860 (5), 957-966, 2016
572016
Use of the LQ model with large fraction sizes results in underestimation of isoeffect doses
T Sheu, J Molkentine, MK Transtrum, TA Buchholz, HR Withers, ...
Radiotherapy and Oncology 109 (1), 21-25, 2013
522013
Sloppiness and the geometry of parameter space
BK Mannakee, AP Ragsdale, MK Transtrum, RN Gutenkunst
Uncertainty in Biology: A Computational Modeling Approach, 271-299, 2016
462016
Optimal experiment selection for parameter estimation in biological differential equation models
MK Transtrum, P Qiu
BMC bioinformatics 13, 1-12, 2012
462012
Vortex nucleation in superconductors within time-dependent Ginzburg-Landau theory in two and three dimensions: Role of surface defects and material inhomogeneities
AR Pack, J Carlson, S Wadsworth, MK Transtrum
Physical Review B 101 (14), 144504, 2020
442020
Measurement-directed reduction of dynamic models in power systems
MK Transtrum, AT Sarić, AM Stanković
IEEE Transactions on Power Systems 32 (3), 2243-2253, 2016
402016
Information geometry approach to verification of dynamic models in power systems
MK Transtrum, AT Sarić, AM Stanković
IEEE Transactions on Power Systems 33 (1), 440-450, 2017
382017
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