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Joshua R. Herr
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Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
E Tisserant, M Malbreil, A Kuo, A Kohler, A Symeonidi, R Balestrini, ...
Proceedings of the National Academy of Sciences 110 (50), 20117-20122, 2013
7712013
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000 Research, 2015
382*2015
Preserving accuracy in GenBank
MI Bidartondo, TD Bruns, M Blackwell, I Edwards, AFS Taylor, ...
Science 319, 1616, 2008
2672008
Sequence-based classification and identification of Fungi
D Hibbett, K Abarenkov, U Kõljalg, M Öpik, B Chai, J Cole, Q Wang, ...
Mycologia 108 (6), 1049-1068, 2016
2342016
Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle
ED Scully, SM Geib, K Hoover, M Tien, SG Tringe, KW Barry, ...
PloS one 8 (9), e73827, 2013
1512013
Ectomycorrhizal fungi and the biotrophy–saprotrophy continuum
RT Koide, JN Sharda, JR Herr, GM Malcolm
New Phytologist 178 (2), 230-233, 2008
1182008
Recent population changes of Fusarium head blight pathogens: drivers and implications
E Valverde-Bogantes, A Bianchini, JR Herr, DJ Rose, SN Wegulo, ...
Canadian Journal of Plant Pathology 42 (3), 315-329, 2020
812020
Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants
A Barakat, NBM Yassin, JS Park, A Choi, JR Herr, JE Carlson
Plant Science 181 (3), 249-257, 2011
532011
Prospects and challenges for fungal metatranscriptomics of complex communities
CR Kuske, CN Hesse, JF Challacombe, D Cullen, JR Herr, RC Mueller, ...
Fungal Ecology 14, 133-137, 2015
492015
Towards the unification of sequence‐based classification and sequence‐based identification of host‐associated microorganisms
JR Herr, M Öpik, DS Hibbett
New Phytologist 205 (1), 27-31, 2015
272015
Rhizosphere microbiomes in a historical maize-soybean rotation system respond to host species and nitrogen fertilization at the genus and subgenus levels
MA Meier, MG Lopez-Guerrero, M Guo, MR Schmer, JR Herr, ...
Applied and environmental microbiology 87 (12), e03132-20, 2021
262021
Community-driven metadata standards for agricultural microbiome research
JP Dundore-Arias, EA Eloe-Fadrosh, LM Schriml, GA Beattie, FP Brennan, ...
Phytobiomes journal 4 (2), 115-121, 2020
242020
Association analyses of host genetics, root-colonizing microbes, and plant phenotypes under different nitrogen conditions in maize
MA Meier, G Xu, MG Lopez-Guerrero, G Li, C Smith, B Sigmon, JR Herr, ...
eLife 11, e75790, 2022
222022
Improving Taxonomic Delimitation of Fungal Species in the Age of Genomics and Phenomics
A Stengel, KM Stanke, A Quattrone, JR Herr
Frontiers in Microbiology, 389, 2022
212022
Traditional Breeding, Genomics-Assisted Breeding, and Biotechnological Modification of Forest Trees and Short Rotation Woody Crops
JR Herr, JE Carlson
Wood-Based Energy in the Northern Forests, 69-89, 2013
18*2013
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
RA Koch, GM Yoon, UK Aryal, K Lail, M Amirebrahimi, K LaButti, A Lipzen, ...
Current Biology 31 (17), 3905-3914. e6, 2021
172021
Lichens and biofilms: common collective growth imparts similar developmental strategies
EC Carr, SD Harris, JR Herr, WR Riekhof
Algal Research 54, 102217, 2021
162021
Bioenergy from trees
JR Herr
New Phytologist 192 (2), 313-315, 2011
142011
The Application of the Skin Virome for Human Identification
EH Graham, S Fernando, J Clarke, JR Herr, M Adamowicz
Forensic Science International: Genetics, p.102662, 2022
112022
Genome Sequence of Fusarium Isolate MYA-4552 from the Midgut of Anoplophora glabripennis, an Invasive, Wood-Boring Beetle
JR Herr, ED Scully, SM Geib, K Hoover, JE Carlson, DM Geiser
Genome Announcements 4 (4), 10.1128/genomea. 00544-16, 2016
112016
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Artikelen 1–20