Mathangi Thiagarajan
Mathangi Thiagarajan
Project Director, Frederick National Lab for Cancer Research
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Structure, function and diversity of the healthy human microbiome
C Huttenhower, D Gevers, R Knight, S Abubucker, JH Badger, ...
nature 486 (7402), 207, 2012
TM4: a free, open-source system for microarray data management and analysis
AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ...
Biotechniques 34 (2), 374-378, 2003
[9] TM4 microarray software suite
AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ...
Methods in enzymology 411, 134-193, 2006
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
Metabolic reconstruction for metagenomic data and its application to the human microbiome
S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ...
PLoS Comput Biol 8 (6), e1002358, 2012
Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote
JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ...
PLoS Biol 4 (9), e286, 2006
Genomic insights into the Ixodes scapularis tick vector of Lyme disease
Nature communications 7 (10507), 2016
Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton
ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ...
Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010
Functional tradeoffs underpin salinity-driven divergence in microbial community composition
CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ...
PloS one 9 (2), e89549, 2014
METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics
J Goll, DB Rusch, DM Tanenbaum, M Thiagarajan, K Li, BA Methé, ...
Bioinformatics 26 (20), 2631-2632, 2010
Metagenomic exploration of viruses throughout the Indian Ocean
SJ Williamson, LZ Allen, HA Lorenzi, DW Fadrosh, D Brami, ...
PloS one 7 (10), e42047, 2012
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.
Cell, 2019
A metagenomic framework for the study of airborne microbial communities
S Yooseph, C Andrews-Pfannkoch, A Tenney, J McQuaid, S Williamson, ...
PloS one 8 (12), e81862, 2013
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic
LZ Allen, EE Allen, JH Badger, JP McCrow, IT Paulsen, LDH Elbourne, ...
The ISME journal 6 (7), 1403-1414, 2012
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap …
RS Coyne, M Thiagarajan, KM Jones, JR Wortman, LJ Tallon, BJ Haas, ...
Bmc Genomics 9 (1), 562, 2008
Comparative genomic analysis and phylogenetic position of Theileria equi
LS Kappmeyer, M Thiagarajan, DR Herndon, JD Ramsay, E Caler, ...
BMC genomics 13 (1), 1-13, 2012
The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data
DM Tanenbaum, J Goll, S Murphy, P Kumar, N Zafar, M Thiagarajan, ...
Standards in genomic sciences 2 (2), 229-237, 2010
Physiogenomic resources for rat models of heart, lung and blood disorders
RL Malek, H Wang, AE Kwitek, AS Greene, N Bhagabati, G Borchardt, ...
Nature genetics 38 (2), 234-239, 2006
Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
H Lorenzi, M Thiagarajan, B Haas, J Wortman, N Hall, E Caler
BMC genomics 9 (1), 595, 2008
Metagenomic investigation of microbes and viruses in patients with jaw osteonecrosis associated with bisphosphonate therapy
PP Sedghizadeh, S Yooseph, DW Fadrosh, L Zeigler-Allen, ...
Oral surgery, oral medicine, oral pathology and oral radiology 114 (6), 764-770, 2012
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