| Modelling and simulating generic RNA-Seq experiments with the flux simulator T Griebel, B Zacher, P Ribeca, E Raineri, V Lacroix, R Guigó, M Sammeth Nucleic acids research 40 (20), 10073-10083, 2012 | 319 | 2012 |
| Motif search in graphs: application to metabolic networks V Lacroix, CG Fernandes, MF Sagot IEEE/ACM transactions on computational biology and bioinformatics 3 (4), 360-368, 2006 | 224 | 2006 |
| An introduction to metabolic networks and their structural analysis V Lacroix, L Cottret, P Thébault, MF Sagot IEEE/ACM transactions on computational biology and bioinformatics 5 (4), 594-617, 2008 | 201 | 2008 |
| Chimeras taking shape: potential functions of proteins encoded by chimeric RNA transcripts M Frenkel-Morgenstern, V Lacroix, I Ezkurdia, Y Levin, A Gabashvili, ... Genome research 22 (7), 1231-1242, 2012 | 162 | 2012 |
| Splicing misregulation of SCN5A contributes to cardiac-conduction delay and heart arrhythmia in myotonic dystrophy F Freyermuth, F Rau, Y Kokunai, T Linke, C Sellier, M Nakamori, Y Kino, ... Nature communications 7 (1), 11067, 2016 | 161 | 2016 |
| A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events M Jaillard, L Lima, M Tournoud, P Mahé, A Van Belkum, V Lacroix, ... PLoS genetics 14 (11), e1007758, 2018 | 140 | 2018 |
| Modes and cuts in metabolic networks: Complexity and algorithms V Acuna, F Chierichetti, V Lacroix, A Marchetti-Spaccamela, MF Sagot, ... Biosystems 95 (1), 51-60, 2009 | 127 | 2009 |
| KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ... BMC bioinformatics 13, 1-12, 2012 | 125 | 2012 |
| Reference-free detection of isolated SNPs R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ... Nucleic acids research 43 (2), e11-e11, 2015 | 106 | 2015 |
| SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ... Nucleic Acids Research 44 (19), e148-e148, 2016 | 89 | 2016 |
| Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules C Sessegolo, C Cruaud, C Da Silva, A Cologne, M Dubarry, T Derrien, ... Scientific reports 9 (1), 1-12, 2019 | 85 | 2019 |
| Exact transcriptome reconstruction from short sequence reads V Lacroix, M Sammeth, R Guigo, A Bergeron Algorithms in Bioinformatics: 8th International Workshop, WABI 2008 …, 2008 | 70 | 2008 |
| Metabolic network visualization eliminating node redundance and preserving metabolic pathways R Bourqui, L Cottret, V Lacroix, D Auber, P Mary, MF Sagot, F Jourdan BMC systems biology 1, 1-19, 2007 | 65 | 2007 |
| ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data M Frenkel-Morgenstern, A Gorohovski, V Lacroix, M Rogers, K Ibanez, ... Nucleic acids research 41 (D1), D142-D151, 2012 | 61 | 2012 |
| Evidence for transcript networks composed of chimeric RNAs in human cells S Djebali, J Lagarde, P Kapranov, V Lacroix, C Borel, JM Mudge, ... PLoS One 7 (1), e28213, 2012 | 61 | 2012 |
| Identifying SNPs without a reference genome by comparing raw reads P Peterlongo, N Schnel, N Pisanti, MF Sagot, V Lacroix String Processing and Information Retrieval: 17th International Symposium …, 2010 | 54 | 2010 |
| Close 3D proximity of evolutionary breakpoints argues for the notion of spatial synteny AS Véron, C Lemaitre, C Gautier, V Lacroix, MF Sagot BMC genomics 12 (1), 1-13, 2011 | 49 | 2011 |
| Advances in analyzing virus-induced alterations of host cell splicing U Ashraf, C Benoit-Pilven, V Lacroix, V Navratil, N Naffakh Trends in microbiology 27 (3), 268-281, 2019 | 44 | 2019 |
| Identification of misexpressed genetic elements in hybrids between Drosophila-related species H Lopez-Maestre, EAG Carnelossi, V Lacroix, N Burlet, B Mugat, ... Scientific reports 7 (1), 1-13, 2017 | 37 | 2017 |
| New insights into minor splicing—a transcriptomic analysis of cells derived from TALS patients A Cologne, C Benoit-Pilven, A Besson, A Putoux, A Campan-Fournier, ... Rna 25 (9), 1130-1149, 2019 | 33 | 2019 |
