EUCALYPT: efficient tree reconciliation enumerator B Donati, C Baudet, B Sinaimeri, P Crescenzi, MF Sagot Algorithms for Molecular Biology 10, 1-11, 2015 | 49 | 2015 |

Cophylogeny reconstruction via an approximate Bayesian computation C Baudet, B Donati, B Sinaimeri, P Crescenzi, C Gautier, C Matias, ... Systematic Biology 64 (3), 416-431, 2015 | 48 | 2015 |

Pairwise compatibility graphs: A survey T Calamoneri, B Sinaimeri siam REVIEW 58 (3), 445-460, 2016 | 38 | 2016 |

All graphs with at most seven vertices are pairwise compatibility graphs T Calamoneri, D Frascaria, B Sinaimeri The Computer Journal 56 (7), 882-886, 2013 | 31 | 2013 |

Exploring pairwise compatibility graphs T Calamoneri, E Montefusco, R Petreschi, B Sinaimeri Theoretical Computer Science 468, 23-36, 2013 | 31 | 2013 |

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ... Algorithms for molecular biology 12, 1-19, 2017 | 23 | 2017 |

On relaxing the constraints in pairwise compatibility graphs T Calamoneri, R Petreschi, B Sinaimeri WALCOM: Algorithms and Computation: 6th International Workshop, WALCOM 2012 …, 2012 | 22 | 2012 |

Pairwise compatibility graphs of caterpillars T Calamoneri, A Frangioni, B Sinaimeri The Computer Journal 57 (11), 1616-1623, 2014 | 16 | 2014 |

Geometric medians in reconciliation spaces of phylogenetic trees KT Huber, V Moulton, MF Sagot, B Sinaimeri Information Processing Letters 136, 96-101, 2018 | 15 | 2018 |

On types of growth for graph-different permutations J Körner, G Simonyi, B Sinaimeri Journal of Combinatorial Theory, Series A 116 (3), 713-723, 2009 | 15 | 2009 |

On the pairwise compatibility property of some superclasses of threshold graphs T Calamoneri, R Petreschi, B Sinaimeri Discrete Mathematics, Algorithms and Applications 5 (02), 1360002, 2013 | 13 | 2013 |

On reverse-free codes and permutations Z Füredi, I Kantor, A Monti, B Sinaimeri SIAM Journal on Discrete Mathematics 24 (3), 964-978, 2010 | 13 | 2010 |

Exploring and visualizing spaces of tree reconciliations KT Huber, V Moulton, MF Sagot, B Sinaimeri Systematic biology 68 (4), 607-618, 2019 | 12 | 2019 |

Compressed weighted de Bruijn graphs GF Italiano, N Prezza, B Sinaimeri, R Venturini CPM 2021-32nd Annual Symposium on Combinatorial Pattern Matching 191 (16), 1-16, 2021 | 10 | 2021 |

Capybara: equivalence ClAss enumeration of coPhylogenY event-BAsed ReconciliAtions Y Wang, A Mary, MF Sagot, B Sinaimeri Bioinformatics 36 (14), 4197-4199, 2020 | 10 | 2020 |

L (2, 1)-labeling of oriented planar graphs T Calamoneri, B Sinaimeri Discrete Applied Mathematics 161 (12), 1719-1725, 2013 | 10 | 2013 |

On bubble generators in directed graphs V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ... Graph-Theoretic Concepts in Computer Science: 43rd International Workshop …, 2017 | 9 | 2017 |

Navigating in a sea of repeats in rna-seq without drowning G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix International Workshop on Algorithms in Bioinformatics, 82-96, 2014 | 7 | 2014 |

On cancellative set families J Körner, B Sinaimeri Combinatorics, Probability and Computing 16 (5), 767-773, 2007 | 6 | 2007 |

Robustness of the parsimonious reconciliation method in cophylogeny L Urbini, B Sinaimeri, C Matias, MF Sagot Algorithms for Computational Biology: Third International Conference, AlCoB …, 2016 | 5 | 2016 |