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Malte Herold
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Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
Nature communications 9 (1), 5091, 2018
2712018
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, A Heintz-Buschart, M Herold, ...
Genome biology 17, 1-21, 2016
1252016
Deep neural networks outperform human expert's capacity in characterizing bioleaching bacterial biofilm composition
A Buetti-Dinh, V Galli, S Bellenberg, O Ilie, M Herold, S Christel, ...
Biotechnology Reports 22, e00321, 2019
1112019
Using metabolic networks to resolve ecological properties of microbiomes
EEL Muller, K Faust, S Widder, M Herold, SM Arbas, P Wilmes
Current Opinion in Systems Biology 8, 73-80, 2018
782018
Multi-omics Reveals the Lifestyle of the Acidophilic, Mineral-Oxidizing Model Species Leptospirillum ferriphilumT
S Christel, M Herold, S Bellenberg, M El Hajjami, A Buetti-Dinh, IV Pivkin, ...
Applied and environmental microbiology 84 (3), e02091-17, 2018
752018
Evolving social contact patterns during the COVID-19 crisis in Luxembourg
A Latsuzbaia, M Herold, JP Bertemes, J Mossong
PloS one 15 (8), e0237128, 2020
672020
Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance
M Herold, S Martínez Arbas, S Narayanasamy, AR Sheik, ...
Nature communications 11 (1), 5281, 2020
632020
Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics
S Martínez Arbas, S Narayanasamy, M Herold, LA Lebrun, ...
Nature microbiology 6 (1), 123-135, 2021
452021
Weak Iron Oxidation by Sulfobacillus thermosulfidooxidans Maintains a Favorable Redox Potential for Chalcopyrite Bioleaching
S Christel, M Herold, S Bellenberg, A Buetti-Dinh, M El Hajjami, IV Pivkin, ...
Frontiers in microbiology 9, 3059, 2018
392018
Automated microscopic analysis of metal sulfide colonization by acidophilic microorganisms
S Bellenberg, A Buetti-Dinh, V Galli, O Ilie, M Herold, S Christel, ...
Applied and environmental microbiology 84 (20), e01835-18, 2018
242018
Genome sequencing of SARS-CoV-2 allows monitoring of variants of concern through wastewater
M Herold, AF d’Hérouël, P May, F Delogu, A Wienecke-Baldacchino, ...
Water 13 (21), 3018, 2021
212021
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and …
A Buetti-Dinh, M Herold, S Christel, M El Hajjami, F Delogu, O Ilie, ...
BMC bioinformatics 21, 1-15, 2020
132020
Challenges, strategies, and perspectives for reference-independent longitudinal multi-omic microbiome studies
S Martínez Arbas, SB Busi, P Queirós, L de Nies, M Herold, P May, ...
Frontiers in Genetics 12, 666244, 2021
122021
First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ
EEL Muller, S Narayanasamy, M Zeimes, CC Laczny, LA Lebrun, ...
Standards in Genomic Sciences 12, 1-8, 2017
112017
Systems biology of acidophile biofilms for efficient metal extraction
A Buetti-Dinh, M Herold, S Christel, ME Hajjami, S Bellenberg, O Ilie, ...
Scientific data 7 (1), 215, 2020
92020
Identification, recovery, and refinement of hitherto undescribed population-level genomes from the human gastrointestinal tract
CC Laczny, EEL Muller, A Heintz-Buschart, M Herold, LA Lebrun, ...
Frontiers in Microbiology 7, 884, 2016
82016
Soil ph, calcium content and bacteria as major factors responsible for the distribution of the known fraction of the DNA bacteriophage populations in soils of Luxembourg
P Florent, HM Cauchie, M Herold, S Jacquet, L Ogorzaly
Microorganisms 10 (7), 1458, 2022
62022
Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential. Nat Commun 9: 5091
L Wampach, A Heintz-Buschart, JV Fritz, J Ramiro-Garcia, J Habier, ...
42018
IMP: a pipeline for reproducible integrated metagenomic and metatranscriptomic analyses
S Narayanasamy, Y Jarosz, EEL Muller, CC Laczny, M Herold, A Kaysen, ...
bioRxiv, 039263, 2016
32016
Environmental dynamics of Campylobacter jejuni genotypes circulating in Luxembourg: what is the role of wild birds?
L Hock, M Herold, C Walczak, A Schoos, C Penny, HM Cauchie, ...
Microbial Genomics 9 (6), 001031, 2023
22023
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Artikelen 1–20