Panagiotis Kastritis
Panagiotis Kastritis
Junior Professor of Cryo-Electron Microscopy and Computational Structural Biology, MLU Halle
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The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
On the binding affinity of macromolecular interactions: daring to ask why proteins interact
PL Kastritis, AMJJ Bonvin
Journal of The Royal Society Interface 10 (79), 20120835, 2013
A structure‐based benchmark for protein–protein binding affinity
PL Kastritis, IH Moal, H Hwang, Z Weng, PA Bates, AMJJ Bonvin, J Janin
Protein Science 20 (3), 482-491, 2011
In situ structural analysis of the human nuclear pore complex
A von Appen, J Kosinski, L Sparks, A Ori, AL DiGuilio, B Vollmer, ...
Nature 526 (7571), 140-143, 2015
Are Scoring Functions in Protein− Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
PL Kastritis, AMJJ Bonvin
Journal of proteome research 9 (5), 2216-2225, 2010
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2
T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ...
Journal of molecular biology 427 (19), 3031-3041, 2015
PRODIGY: a web server for predicting the binding affinity of protein–protein complexes
LC Xue, JP Rodrigues, PL Kastritis, AM Bonvin, A Vangone
Bioinformatics 32 (23), 3676-3678, 2016
Antimicrobial and efflux pump inhibitory activity of caffeoylquinic acids from Artemisia absinthium against gram-positive pathogenic bacteria
YC Fiamegos, PL Kastritis, V Exarchou, H Han, AMJJ Bonvin, J Vervoort, ...
PLoS One 6 (4), e18127, 2011
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of Molecular Biology 414 (2), 289-302, 2011
Building macromolecular assemblies by information-driven docking: introducing the HADDOCK multibody docking server
E Karaca, ASJ Melquiond, SJ De Vries, PL Kastritis, AMJJ Bonvin
Molecular & Cellular Proteomics 9 (8), 1784-1794, 2010
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
Clustering biomolecular complexes by residue contacts similarity
JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ...
Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012
Spatiotemporal variation of mammalian protein complex stoichiometries
A Ori, M Iskar, K Buczak, P Kastritis, L Parca, A Andrés-Pons, S Singer, ...
Genome biology 17 (1), 1-15, 2016
Proteins feel more than they see: fine-tuning of binding affinity by properties of the non-interacting surface
PL Kastritis, JP Rodrigues, GE Folkers, R Boelens, AMJJ Bonvin
Journal of molecular biology 426 (14), 2632-2652, 2014
Haloadaptation: insights from comparative modeling studies of halophilic archaeal DHFRs
PL Kastritis, NC Papandreou, SJ Hamodrakas
International Journal of Biological Macromolecules 41 (4), 447-453, 2007
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
Subnanometre-resolution structure of the doublet microtubule reveals new classes of microtubule-associated proteins
M Ichikawa, D Liu, PL Kastritis, K Basu, TC Hsu, S Yang, KH Bui
Nature communications 8 (1), 1-12, 2017
Strengths and weaknesses of data‐driven docking in critical assessment of prediction of interactions
SJ de Vries, ASJ Melquiond, PL Kastritis, E Karaca, A Bordogna, ...
Proteins: Structure, Function, and Bioinformatics 78 (15), 3242-3249, 2010
Blind prediction of interfacial water positions in CAPRI
MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ...
Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014
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