Alex Marand
Title
Cited by
Cited by
Year
Widespread long-range cis-regulatory elements in the maize genome
WA Ricci, Z Lu, L Ji, AP Marand, CL Ethridge, NG Murphy, JM Noshay, ...
Nature plants 5 (12), 1237-1249, 2019
872019
The prevalence, evolution and chromatin signatures of plant regulatory elements
Z Lu, AP Marand, WA Ricci, CL Ethridge, X Zhang, RJ Schmitz
Nature plants 5 (12), 1250-1259, 2019
642019
PlantDHS: a database for DNase I hypersensitive sites in plants
T Zhang, AP Marand, J Jiang
Nucleic acids research 44 (D1), D1148-D1153, 2016
502016
Genome sequence of M6, a diploid inbred clone of the high‐glycoalkaloid‐producing tuber‐bearing potato species Solanum chacoense, reveals residual …
CP Leisner, JP Hamilton, E Crisovan, NC Manrique‐Carpintero, ...
The Plant Journal 94 (3), 562-570, 2018
472018
Proliferation of regulatory DNA elements derived from transposable elements in the maize genome
H Zhao, W Zhang, L Chen, L Wang, AP Marand, Y Wu, J Jiang
Plant Physiology 176 (4), 2789-2803, 2018
382018
Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato
AP Marand, SH Jansky, H Zhao, CP Leisner, X Zhu, Z Zeng, E Crisovan, ...
Genome biology 18 (1), 1-16, 2017
332017
Towards genome-wide prediction and characterization of enhancers in plants
AP Marand, T Zhang, B Zhu, J Jiang
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1860 (1), 131-139, 2017
312017
Cold stress induces enhanced chromatin accessibility and bivalent histone modifications H3K4me3 and H3K27me3 of active genes in potato
Z Zeng, W Zhang, AP Marand, B Zhu, CR Buell, J Jiang
Genome biology 20 (1), 1-17, 2019
302019
Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes
PA Crisp, AP Marand, JM Noshay, P Zhou, Z Lu, RJ Schmitz, NM Springer
Proceedings of the National Academy of Sciences 117 (38), 23991-24000, 2020
142020
Historical meiotic crossover hotspots fueled patterns of evolutionary divergence in rice
AP Marand, H Zhao, W Zhang, Z Zeng, C Fang, J Jiang
The Plant Cell 31 (3), 645-662, 2019
122019
Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
R Kieft, Y Zhang, AP Marand, JD Moran, R Bridger, L Wells, RJ Schmitz, ...
PLoS genetics 16 (2), e1008390, 2020
72020
Residual heterozygosity and epistatic interactions underlie the complex genetic architecture of yield in diploid potato
AP Marand, SH Jansky, JL Gage, AJ Hamernik, N de Leon, J Jiang
Genetics 212 (1), 317-332, 2019
62019
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
bioRxiv, 10.1101/2021.01.14.426684, 2021
42021
A cis-regulatory atlas in maize at single-cell resolution
AP Marand, Z Chen, A Gallavotti, RJ Schmitz
Cell, 2021
32021
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons
JM Noshay, AP Marand, SN Anderson, P Zhou, MK Mejia Guerra, Z Lu, ...
Genetics 217 (1), 1-13, 2021
3*2021
Chromatin accessibility profiling methods
LM Minnoye, GK Marinov, T Krausgruber, L Pan, AP Marand, S Secchia, ...
Nature Reviews Methods Primers 1 (1), 2021
22021
Stability of DNA methylation and chromatin accessibility in structurally diverse maize genomes
JM Noshay, Z Liang, P Zhou, PA Crisp, AP Marand, CN Hirsch, ...
bioRxiv, 2021
2021
Maize 509 line TE PAV calls
NM Springer, JM Noshay, CN Hirsch, AP Marand, SN Anderson, P Zhou, ...
2020
Dissecting Genes that contribute to Yield in Potato
S Jansky, A Marand, J Jiang
Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019
2019
Systematic Discovery of Gene Regulatory Elements using Chromatin Structure in Plant Genomes
R Schmitz, W Ricci, Z Lu, L Ji, A Marand, MKM Guerra, C Ethridge, M Galli, ...
Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019
2019
The system can't perform the operation now. Try again later.
Articles 1–20