Ben Lengerich
Ben Lengerich
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Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of the Royal Society Interface 15 (141), 2018
Precision lasso: Accounting for correlations and linear dependencies in high-dimensional genomic data
H Wang, BJ Lengerich, B Aragam, EP Xing
Bioinformatics, 2018
Retrofitting Distributional Embeddings to Knowledge Graphs with Functional Relations
BJ Lengerich, AL Maas, C Potts
International Conference on Computational Linguistics (COLING) 27, 2423-2436, 2018
Experimental and computational mutagenesis to investigate the positioning of a general base within an enzyme active site
JP Schwans, P Hanoian, BJ Lengerich, F Sunden, A Gonzalez, Y Tsai, ...
Biochemistry 53 (15), 2541-2555, 2014
Towards visual explanations for convolutional neural networks via input resampling
BJ Lengerich, S Konam, EP Xing, S Rosenthal, M Veloso
arXiv preprint arXiv:1707.09641, 2017
Personalized Regression Enables Sample-Specific Pan-Cancer Analysis
BJ Lengerich, B Aragam, EP Xing
Bioinformatics 34 (13), i178-i186, 2018
How interpretable and trustworthy are gams?
CH Chang, S Tan, B Lengerich, A Goldenberg, R Caruana
Proceedings of the 27th ACM SIGKDD Conference on Knowledge Discovery & Data …, 2021
Learning sample-specific models with low-rank personalized regression
B Lengerich, B Aragam, EP Xing
arXiv preprint arXiv:1910.06939, 2019
Purifying interaction effects with the functional anova: An efficient algorithm for recovering identifiable additive models
B Lengerich, S Tan, CH Chang, G Hooker, R Caruana
International Conference on Artificial Intelligence and Statistics, 2402-2412, 2020
On dropout, overfitting, and interaction effects in deep neural networks
B Lengerich, EP Xing, R Caruana
arXiv preprint arXiv:2007.00823, 2020
Hybrid subspace learning for high-dimensional data
M Marchetti-Bowick, BJ Lengerich, AP Parikh, EP Xing
arXiv preprint arXiv:1808.01687, 2018
Data-Driven Patterns in Protective Effects of Ibuprofen and Ketorolac on Hospitalized Covid-19 Patients
BJ Lengerich, R Caruana, YJ Aphinyanaphongs
medRxiv, 2021
Ten Quick Tips for Deep Learning in Biology
BD Lee, A Gitter, CS Greene, S Raschka, F Maguire, AJ Titus, MD Kessler, ...
arXiv preprint arXiv:2105.14372, 2021
Length of labor and severe maternal morbidity in the NTSV population
BJ Lengerich, R Caruana, WB Weeks, I Painter, S Spencer, K Sitcov, ...
American Journal of Obstetrics & Gynecology 224 (2), S33, 2021
Insights into severe maternal morbidity in the NTSV population
BJ Lengerich, R Caruana, WB Weeks, I Painter, S Spencer, K Sitcov, ...
American Journal of Obstetrics & Gynecology 224 (2), S629-S630, 2021
Neutrophil Lymphocyte Ratio as a Predictor of Glucocorticoid Effectiveness in Covid-19 Treatment
BJ Lengerich, R Caruana, A Peysakhovich, L Horwitz, ...
medRxiv, 2021
Sample-Specific Models for Precision Medicine
B Lengerich
Carnegie Mellon University, 2020
Disentangling Increased Testing From Covid-19 Epidemic Spread
BJ Lengerich, W Neiswanger, EJ Lengerich, EP Xing
medRxiv, 2020
Discriminative Subtyping of Lung Cancers from Histopathology Images via Contextual Deep Learning
BJ Lengerich, M Al-Shedivat, A Alavi, J Williams, S Labbaki, EP Xing
medRxiv, 2020
Differential Principal Components Reveal Patterns of Differentiation in Case/Control Studies
BJ Lengerich, EP Xing
bioRxiv, 545798, 2019
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