Jean-François Flot
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SeqPHASE: a web tool for interconverting PHASE input/output files and FASTA sequence alignments
JF Flot
Molecular Ecology Resources 10 (1), 162-166, 2010
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
JF Flot, B Hespeels, X Li, B Noel, I Arkhipova, EGJ Danchin, A Hejnol, ...
Nature 500 (7463), 453-457, 2013
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution
EE Schwager, PP Sharma, T Clarke, DJ Leite, T Wierschin, M Pechmann, ...
BMC Biology 15, 62, 2017
Guidelines for DNA taxonomy, with a focus on the meiofauna
D Fontaneto, JF Flot, CQ Tang
Marine Biodiversity 45, 433-451, 2015
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes
R Blanc-Mathieu, L Perfus-Barbeoch, JM Aury, M Da Rocha, J Gouzy, ...
PLoS genetics 13 (6), e1006777, 2017
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in ecology & evolution 37 (3), 197-202, 2022
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
M Marbouty, A Cournac, JF Flot, H Marie-Nelly, J Mozziconacci, R Koszul
elife 3, e03318, 2014
DNAqua-Net: Developing new genetic tools for bioassessment and monitoring of aquatic ecosystems in Europe
F Leese, F Altermatt, A Bouchez, T Ekrem, D Hering, K Meissner, ...
Research Ideas and Outcomes 2, e11321, 2016
High-quality genome (re)assembly using chromosomal contact data
H Marie-Nelly, M Marbouty, A Cournac, JF Flot, G Liti, DP Parodi, S Syan, ...
Nature Communications 5, 5695, 2014
Haplowebs as a graphical tool for delimiting species: a revival of Doyle's "field for recombination" approach and its application to the coral genus Pocillopora in Clipperton
JF Flot, A Couloux, S Tillier
BMC evolutionary biology 10 (1), 372, 2010
The hitchhiker's guide to single‐locus species delimitation
S Dellicour, JF Flot
Molecular Ecology Resources 18 (6), 1234-1246, 2018
Phase determination from direct sequencing of length‐variable DNA regions
JF Flot, A Tillier, S Samadi, S Tillier
Molecular Ecology Notes 6 (3), 627-630, 2006
Comparative analysis of the genomes of Stylophora pistillata and Acropora digitifera provides evidence for extensive differences between species of corals
CR Voolstra, Y Li, YJ Liew, S Baumgarten, D Zoccola, J Flot, S Tambutté, ...
Scientific Reports 7 (1), 17583, 2017
The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function
JF Flot, S Tillier
Gene 401 (1), 80-87, 2007
Patterns of genetic structure among Hawaiian corals of the genus Pocillopora yield clusters of individuals that are compatible with morphology
JF Flot, H Magalon, C Cruaud, A Couloux, S Tillier
Comptes rendus biologies 331 (3), 239-247, 2008
Champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths
JF Flot
Molecular Ecology Notes 7 (6), 974-977, 2007
Delimiting species-poor data sets using single molecular markers: a study of barcode gaps, haplowebs and GMYC
S Dellicour, JF Flot
Systematic Biology 64 (6), 900-908, 2015
Incongruence between morphotypes and genetically delimited species in the coral genus Stylophora: phenotypic plasticity, morphological convergence …
JF Flot, J Blanchot, L Charpy, C Cruaud, WY Licuanan, Y Nakano, C Payri, ...
BMC ecology 11, 1-14, 2011
Genetic exchange among bdelloid rotifers is more likely due to horizontal gene transfer than to meiotic sex
N Debortoli, X Li, I Eyres, D Fontaneto, B Hespeels, CQ Tang, JF Flot, ...
Current Biology 26 (6), 723–732, 2016
A genomic glance through the fog of plasticity and diversification in Pocillopora
EC Johnston, ZH Forsman, JF Flot, S Schmidt-Roach, JH Pinzón, ...
Scientific Reports 7 (1), 5991, 2017
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