Jerome Kelleher
Jerome Kelleher
Big Data Institute, University of Oxford
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Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
Efficient coalescent simulation and genealogical analysis for large sample sizes
J Kelleher, AM Etheridge, G McVean
PLoS computational biology 12 (5), e1004842, 2016
Inferring whole-genome histories in large population datasets
J Kelleher, Y Wong, AW Wohns, C Fadil, PK Albers, G McVean
Nature genetics 51 (9), 1330-1338, 2019
Efficient ancestry and mutation simulation with msprime 1.0
F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ...
Genetics 220 (3), iyab229, 2022
Tree‐sequence recording in SLiM opens new horizons for forward‐time simulation of whole genomes
BC Haller, J Galloway, J Kelleher, PW Messer, PL Ralph
Molecular ecology resources 19 (2), 552-566, 2019
Efficient pedigree recording for fast population genetics simulation
J Kelleher, KR Thornton, J Ashander, PL Ralph
PLoS computational biology 14 (11), e1006581, 2018
GA4GH: International policies and standards for data sharing across genomic research and healthcare
HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ...
Cell genomics 1 (2), 2021
A community-maintained standard library of population genetic models
JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ...
elife 9, e54967, 2020
A unified genealogy of modern and ancient genomes
AW Wohns, Y Wong, B Jeffery, A Akbari, S Mallick, R Pinhasi, N Patterson, ...
Science 375 (6583), eabi8264, 2022
An accurate and scalable collaborative recommender
J Kelleher, D Bridge
Artificial Intelligence Review 21 (3), 193-213, 2004
A new model for extinction and recolonization in two dimensions: quantifying phylogeography
NH Barton, J Kelleher, AM Etheridge
Evolution 64 (9), 2701-2715, 2010
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
BioRxiv, 101378, 2017
Genetic hitchhiking in spatially extended populations
NH Barton, AM Etheridge, J Kelleher, A Véber
Theoretical population biology 87, 75-89, 2013
Efficiently summarizing relationships in large samples: a general duality between statistics of genealogies and genomes
P Ralph, K Thornton, J Kelleher
Genetics 215 (3), 779-797, 2020
Accounting for long-range correlations in genome-wide simulations of large cohorts
D Nelson, J Kelleher, AP Ragsdale, C Moreau, G McVean, S Gravel
PLoS genetics 16 (5), e1008619, 2020
Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks
NH Barton, AM Etheridge, J Kelleher, A Véber
Theoretical population biology 87, 105-119, 2013
Experiments in sparsity reduction: Using clustering in collaborative recommenders
D Bridge, J Kelleher
Irish Conference on Artificial Intelligence and Cognitive Science, 144-149, 2002
Generating all partitions: a comparison of two encodings
J Kelleher, B O'Sullivan
arXiv preprint arXiv:0909.2331, 2009
Coalescent simulation with msprime
J Kelleher, K Lohse
Statistical Population Genomics 986, 191-230, 2020
Coalescent simulation in continuous space: Algorithms for large neighbourhood size
J Kelleher, AM Etheridge, NH Barton
Theoretical population biology 95, 13-23, 2014
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