Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries J Błażewicz, P Formanowicz, M Kasprzak, WT Markiewicz, A Świercz Computational biology and chemistry 28 (1), 11-19, 2004 | 34 | 2004 |
Whole genome assembly from 454 sequencing output via modified DNA graph concept J Blazewicz, M Bryja, M Figlerowicz, P Gawron, M Kasprzak, E Kirton, ... Computational Biology and Chemistry 33 (3), 224-230, 2009 | 29 | 2009 |
A hyper-heuristic approach to sequencing by hybridization of DNA sequences J Blazewicz, EK Burke, G Kendall, W Mruczkiewicz, C Oguz, A Swiercz Annals of Operations Research 207, 27-41, 2013 | 24 | 2013 |
DNA sequencing by hybridization via genetic search J Blazewicz, C Oguz, A Swiercz, J Weglarz Operations Research 54 (6), 1185-1192, 2006 | 24 | 2006 |
Dealing with repetitions in sequencing by hybridization J Blazewicz, F Glover, M Kasprzak, WT Markiewicz, C OĞuz, ... Computational Biology and Chemistry 30 (5), 313-320, 2006 | 21 | 2006 |
Graph algorithms for DNA sequencing–origins, current models and the future J Blazewicz, M Kasprzak, M Kierzynka, W Frohmberg, A Swiercz, ... European Journal of Operational Research 264 (3), 799-812, 2018 | 20 | 2018 |
Hyper‐Heuristics and Metaheuristics for Selected Bio‐Inspired Combinatorial Optimization Problems A Swiercz Heuristics and Hyper-Heuristics-Principles and Applications 1, 3-20, 2017 | 19 | 2017 |
Transcriptome remodeling in gradual development of inverse resistance between paclitaxel and cisplatin in ovarian cancer cells J Szenajch, A Szabelska-Beręsewicz, A Świercz, J Zyprych-Walczak, ... International Journal of Molecular Sciences 21 (23), 9218, 2020 | 18 | 2020 |
An integrated approach (cluster analysis integration method) to combine expression data and protein–protein interaction networks in agrigenomics: application on arabidopsis … D Santoni, A Swiercz, A Żmieńko, M Kasprzak, M Blazewicz, P Bertolazzi, ... Omics: A journal of integrative biology 18 (2), 155-165, 2014 | 18 | 2014 |
A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly M Goralski, P Sobieszczanska, A Obrepalska-Steplowska, A Swiercz, ... Plant Methods 12, 1-10, 2016 | 15 | 2016 |
Characterization of Sus scrofa Small Non-Coding RNAs Present in Both Female and Male Gonads D Kowalczykiewicz, A Świercz, L Handschuh, K Leśniak, M Figlerowicz, ... PLoS One 9 (11), e113249, 2014 | 14 | 2014 |
Characterization of RNP networks of PUM1 and PUM2 post-transcriptional regulators in TCam-2 cells, a human male germ cell model MJ Smialek, E Ilaslan, MP Sajek, A Swiercz, DM Janecki, ... Cells 9 (4), 984, 2020 | 13 | 2020 |
Unified encoding for hyper-heuristics with application to bioinformatics A Swiercz, EK Burke, M Cichenski, G Pawlak, S Petrovic, T Zurkowski, ... Central European Journal of Operations Research 22, 567-589, 2014 | 13 | 2014 |
Genome-scale de novo assembly using ALGA S Swat, A Laskowski, J Badura, W Frohmberg, P Wojciechowski, ... Bioinformatics 37 (12), 1644-1651, 2021 | 8 | 2021 |
GRASShopPER—An algorithm for de novo assembly based on GPU alignments A Swiercz, W Frohmberg, M Kierzynka, P Wojciechowski, P Zurkowski, ... PloS one 13 (8), e0202355, 2018 | 8 | 2018 |
DNA sequence assembly involving an acyclic graph model J Blazewicz, W Frohmberg, P Gawron, M Kasprzak, M Kierzynka, ... Foundations of Computing and Decision Sciences 38 (1), 25-34, 2013 | 8 | 2013 |
Antifungal Agent 4-AN Changes the Genome-Wide Expression Profile, Downregulates Virulence-Associated Genes and Induces Necrosis in Candida albicans Cells A Martyna, M Masłyk, M Janeczko, E Kochanowicz, B Gielniewski, ... Molecules 25 (12), 2928, 2020 | 6 | 2020 |
MTTE: an innovative strategy for the evaluation of targeted/exome enrichment efficiency K Klonowska, L Handschuh, A Swiercz, M Figlerowicz, P Kozlowski Oncotarget 7 (41), 67266, 2016 | 4 | 2016 |
Parallel implementation of the novel approach to genome assembly J Blazewicz, M Kasprzak, A Swiercz, M Figlerowicz, P Gawron, D Platt, ... 2008 Ninth ACIS International Conference on Software Engineering, Artificial …, 2008 | 3 | 2008 |
Human PUM1 and PUM2 exhibit regulation of divergent mRNA targets in male germ cells MJ Smialek, E Ilaslan, MP Sajek, A Swiercz, DM Janecki, ... Biorxiv, 760967, 2019 | 2 | 2019 |