Zhenqiang Su
Zhenqiang Su
Takeda Pharmaceuticals
Verified email at takeda.com
Title
Cited by
Cited by
Year
The MicroArray Quality Control (MAQC) project shows inter-and intraplatform reproducibility of gene expression measurements
Maqc Consortium
Nature biotechnology 24 (9), 1151, 2006
22732006
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Z Su, PP Labaj, S Li, J Thierry-Mieg, D Thierry-Mieg, W Shi, C Wang, ...
Nature Biotechnology 32 (9), 903–914, 2014
6322014
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.
L Shi, G Campbell, WD Jones, F Campagne, Z Wen, SJ Walker, Z Su, ...
Nature biotechnology 28 (8), 827-838, 2010
6292010
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
3862014
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
2622015
A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Y Yu, JC Fuscoe, C Zhao, C Guo, M Jia, T Qing, DI Bannon, L Lancashire, ...
Nature communications 5 (1), 1-11, 2014
2622014
Cross-platform comparability of microarray technology: intra-platform consistency and appropriate data analysis procedures are essential
L Shi, W Tong, H Fang, U Scherf, J Han, RK Puri, FW Frueh, FM Goodsaid, ...
BMC bioinformatics 6 (2), 1-14, 2005
2392005
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies
L Shi, WD Jones, RV Jensen, SC Harris, RG Perkins, FM Goodsaid, ...
BMC bioinformatics 9 (9), 1-19, 2008
2322008
Mold2, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics
H Hong, Q Xie, W Ge, F Qian, H Fang, L Shi, Z Su, R Perkins, W Tong
Journal of chemical information and modeling 48 (7), 1337-1344, 2008
2072008
Next-generation sequencing and its applications in molecular diagnostics
Z Su, B Ning, H Fang, H Hong, R Perkins, W Tong, L Shi
Expert review of molecular diagnostics 11 (3), 333-343, 2011
1952011
An investigation of biomarkers derived from legacy microarray data for their utility in the RNA-seq era
Z Su, H Fang, H Hong, L Shi, W Zhang, W Zhang, Y Zhang, Z Dong, ...
Genome biology 15 (12), 1-25, 2014
1192014
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
MaQC Consortium
Nature biotechnology 28 (8), 827, 2010
1092010
Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures
SA Munro, SP Lund, PS Pine, H Binder, DA Clevert, A Conesa, J Dopazo, ...
Nature communications 5 (1), 1-10, 2014
982014
Comparing next-generation sequencing and microarray technologies in a toxicological study of the effects of aristolochic acid on rat kidneys
Z Su, Z Li, T Chen, QZ Li, H Fang, D Ding, W Ge, B Ning, H Hong, ...
Chemical research in toxicology 24 (9), 1486-1493, 2011
892011
Microarray scanner calibration curves: characteristics and implications
L Shi, W Tong, Z Su, T Han, J Han, RK Puri, H Fang, FW Frueh, ...
BMC bioinformatics 6 (2), 1-14, 2005
892005
Identification of urinary microRNA profiles in rats that may diagnose hepatotoxicity
X Yang, J Greenhaw, Q Shi, Z Su, F Qian, K Davis, DL Mendrick, ...
Toxicological Sciences 125 (2), 335-344, 2012
812012
ArrayTrack: an FDA and public genomic tool
H Fang, SC Harris, Z Su, M Chen, F Qian, L Shi, R Perkins, W Tong
Protein Networks and Pathway Analysis, 379-398, 2009
682009
Technical reproducibility of genotyping SNP arrays used in genome-wide association studies
H Hong, L Xu, J Liu, WD Jones, Z Su, B Ning, R Perkins, W Ge, K Miclaus, ...
Public Library of Science 7 (9), e44483, 2012
582012
The liver toxicity biomarker study: phase I design and preliminary results
RN Mcburney, WM Hines, LS Von Tungeln, LK Schnackenberg, ...
Toxicologic pathology 37 (1), 52-64, 2009
572009
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples
H Hong, Z Su, W Ge, L Shi, R Perkins, H Fang, J Xu, JJ Chen, T Han, ...
Bmc Bioinformatics 9 (9), 1-13, 2008
572008
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