Follow
Bonnie Berger
Bonnie Berger
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues
CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ...
Cell 181 (5), 1016-1035. e19, 2020
23222020
Efficient Bayesian mixed-model analysis increases association power in large cohorts
PR Loh, G Tucker, BK Bulik-Sullivan, BJ Vilhjįlmsson, HK Finucane, ...
Nature genetics 47 (3), 284-290, 2015
14902015
Ancient human genomes suggest three ancestral populations for present-day Europeans
I Lazaridis, N Patterson, A Mittnik, G Renaud, S Mallick, K Kirsanow, ...
Nature 513 (7518), 409-413, 2014
14862014
Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ...
Science 330 (6012), 1787-1797, 2010
10702010
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
1055*2008
MultiCoil: a program for predicting two‐and three‐stranded coiled coils
E Wolf, PS Kim, B Berger
Protein Science 6 (6), 1179-1189, 1997
9231997
Predicting coiled coils by use of pairwise residue correlations.
B Berger, DB Wilson, E Wolf, T Tonchev, M Milla, PS Kim
Proceedings of the National Academy of Sciences 92 (18), 8259-8263, 1995
8281995
ARACHNE: a whole-genome shotgun assembler
S Batzoglou, DB Jaffe, K Stanley, J Butler, S Gnerre, E Mauceli, B Berger, ...
Genome research 12 (1), 177-189, 2002
7832002
Protein folding in the hydrophobic-hydrophilic (HP) is NP-complete
B Berger, T Leighton
Proceedings of the second annual international conference on Computational …, 1998
7171998
Positive-unlabeled convolutional neural networks for particle picking in cryo-electron micrographs
T Bepler, A Morin, M Rapp, J Brasch, L Shapiro, AJ Noble, B Berger
Nature methods 16 (11), 1153-1160, 2019
6962019
An integrative approach to ortholog prediction for disease-focused and other functional studies
Y Hu, I Flockhart, A Vinayagam, C Bergwitz, B Berger, N Perrimon, ...
BMC bioinformatics 12, 1-16, 2011
6752011
Efficient integration of heterogeneous single-cell transcriptomes using Scanorama
B Hie, B Bryson, B Berger
Nature biotechnology 37 (6), 685-691, 2019
6222019
Human and mouse gene structure: comparative analysis and application to exon prediction
S Batzoglou, L Pachter, J Mesirov, B Berger, ES Lander
Proceedings of the fourth annual international conference on Computational …, 2000
5872000
Widespread macromolecular interaction perturbations in human genetic disorders
N Sahni, S Yi, M Taipale, JIF Bass, J Coulombe-Huntington, F Yang, ...
Cell 161 (3), 647-660, 2015
5612015
Paircoil2: improved prediction of coiled coils from sequence
AV McDonnell, T Jiang, AE Keating, B Berger
Bioinformatics 22 (3), 356-358, 2006
5052006
Herpesviral protein networks and their interaction with the human proteome
P Uetz, YA Dong, C Zeretzke, C Atzler, A Baiker, B Berger, SV Rajagopala, ...
Science 311 (5758), 239-242, 2006
4912006
IsoRankN: spectral methods for global alignment of multiple protein networks
CS Liao, K Lu, M Baym, R Singh, B Berger
Bioinformatics 25 (12), i253-i258, 2009
4832009
Inferring admixture histories of human populations using linkage disequilibrium
PR Loh, M Lipson, N Patterson, P Moorjani, JK Pickrell, D Reich, B Berger
Genetics 193 (4), 1233-1254, 2013
4752013
A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways
M Taipale, G Tucker, J Peng, I Krykbaeva, ZY Lin, B Larsen, H Choi, ...
Cell 158 (2), 434-448, 2014
4262014
Allergic inflammatory memory in human respiratory epithelial progenitor cells
J Ordovas-Montanes, DF Dwyer, SK Nyquist, KM Buchheit, M Vukovic, ...
Nature 560 (7720), 649-654, 2018
4122018
The system can't perform the operation now. Try again later.
Articles 1–20