| Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis M Masso, II Vaisman Bioinformatics 24 (18), 2002-2009, 2008 | 181 | 2008 |
| AUTO-MUTE: web-based tools for predicting stability changes in proteins due to single amino acid replacements M Masso, II Vaisman Protein Engineering, Design & Selection 23 (8), 683-687, 2010 | 107 | 2010 |
| AUTO-MUTE 2.0: a portable framework with enhanced capabilities for predicting protein functional consequences upon mutation M Masso, II Vaisman Advances in bioinformatics 2014, 2014 | 66 | 2014 |
| Accurate prediction of enzyme mutant activity based on a multibody statistical potential M Masso, II Vaisman Bioinformatics 23 (23), 3155-3161, 2007 | 63 | 2007 |
| Knowledge-based computational mutagenesis for predicting the disease potential of human non-synonymous single nucleotide polymorphisms M Masso, II Vaisman Journal of Theoretical Biology 266 (4), 560-568, 2010 | 60 | 2010 |
| Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro‐fuzzy classifiers M Barenboim, M Masso, II Vaisman, DC Jamison Proteins: Structure, Function, and Bioinformatics 71 (4), 1930-1939, 2008 | 45 | 2008 |
| Comprehensive mutagenesis of HIV-1 protease: a computational geometry approach M Masso, II Vaisman Biochemical and Biophysical Research Communications 305 (2), 322-326, 2003 | 38 | 2003 |
| Computational mutagenesis studies of protein structure‐function correlations M Masso, Z Lu, II Vaisman Proteins: Structure, Function, and Bioinformatics 64 (1), 234-245, 2006 | 37 | 2006 |
| Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage M Masso, II Vaisman BMC bioinformatics 11, 1-11, 2010 | 28 | 2010 |
| Sequence and structure based models of HIV-1 protease and reverse transcriptase drug resistance M Masso, II Vaisman BMC genomics 14, 1-13, 2013 | 21 | 2013 |
| A combined sequence–structure approach for predicting resistance to the non-nucleoside HIV-1 reverse transcriptase inhibitor Nevirapine VL Ravich, M Masso, II Vaisman Biophysical chemistry 153 (2-3), 168-172, 2011 | 18 | 2011 |
| Structure-based prediction of protein activity changes: assessing the impact of single residue replacements M Masso, II Vaisman 2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011 | 13 | 2011 |
| Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity M Masso, K Hijazi, N Parvez, II Vaisman Bioinformatics Research and Applications: Fourth International Symposium …, 2008 | 12 | 2008 |
| All-atom four-body knowledge-based statistical potential to distinguish native tertiary RNA structures from nonnative folds M Masso Journal of Theoretical Biology 453, 58-67, 2018 | 8 | 2018 |
| All-atom four-body knowledge-based statistical potentials to distinguish native protein structures from nonnative folds M Masso BioMed Research International 2017, 2017 | 8 | 2017 |
| Structure-based predictors of resistance to the HIV-1 integrase inhibitor Elvitegravir M Masso, G Chuang, S Jain, K Hao, II Vaisman Biophysical Journal 106 (2), 409a, 2014 | 8 | 2014 |
| A structure-based computational mutagenesis elucidates the spectrum of stability-activity relationships in proteins M Masso, II Vaisman 2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011 | 7 | 2011 |
| Modeling the functional consequences of single residue replacements in bacteriophage f1 gene V protein M Masso, E Mathe, N Parvez, K Hijazi, II Vaisman Protein Engineering, Design & Selection 22 (11), 665-671, 2009 | 7 | 2009 |
| Sequence-based predictive models of resistance to HIV-1 integrase inhibitors: an n-grams approach to phenotype assessment M Masso Current HIV Research 13 (6), 497-502, 2015 | 6 | 2015 |
| Prediction of human immunodeficiency virus type 1 drug resistance: representation of target sequence mutational patterns via an n-grams approach M Masso 2012 IEEE International Conference on Bioinformatics and Biomedicine, 1-6, 2012 | 6 | 2012 |
