Martin Krallinger

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Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Verified email at bsc.es
Florian LeitnerData Catalytics, ION Analytics, IE UniversityVerified email at datacatalytics.com
Lynette HirschmanThe MITRE CorporationVerified email at mitre.org
Obdulia RabalCIMA - University of NavarraVerified email at unav.es
Marta VillegasResearcher Universitat Pompeu FabraVerified email at upf.edu
Kevin Bretonnel CohenDirector, Biomedical Text Mining, U. Colorado School of MedicineVerified email at ucdenver.edu
Ander IntxaurrondoResearcher at the Barcelona Supercomputing CenterVerified email at bsc.es
Miguel VazquezBarcelona Supercomputing Center - Spanish National HPCVerified email at bsc.es
Aitor Gonzalez-AgirreBarcelona Supercomputing Center (BSC)Verified email at bsc.es
Cathy WuUniversity of DelawareVerified email at udel.edu
Antonio Miranda-EscaladaReserch Engineer, Barcelona Supercomputing CenterVerified email at bsc.es
Cecilia ArighiUniversity of DelawareVerified email at udel.edu
C Rodríguez-PenagosSenior Researcher at Barcelona Supercomputing CenterVerified email at bsc.es
Zhiyong LuDeputy Director for Literature Search, NCBI; Senior Investigator, NCBI-NLMVerified email at nih.gov
Martín Perez PerezCINBIO, Universidade de Vigo, Department of Computer Science, ESEI – Escuela Superior de IngenieríaVerified email at esei.uvigo.es
Jose A Lopez-MartinGÉTICA | PharmaMarVerified email at systemsmed.net
Montserrat MarimonUniversitat Pompeu FabraVerified email at upf.edu
Jordi Armengol-EstapéUniversity of EdinburghVerified email at ed.ac.uk
Florentino Fdez-RiverolaProfessor, Computer Science Department, University of VigoVerified email at uvigo.es
Felipe SoaresApple Inc.Verified email at apple.com

Martin Krallinger

*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)

Verified email at bsc.es - Homepage

Biomedicine NLP text mining bioinformatics AI


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Overview of the protein-protein interaction annotation extraction task of BioCreative II M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia Genome biology 9 (2), 1-19, 2008	325	2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology M Krallinger, A Valencia, L Hirschman Genome biology 9 (2), 1-14, 2008	264	2008
Text-mining and information-retrieval services for molecular biology M Krallinger, A Valencia Genome biology 6 (7), 1-8, 2005	253	2005
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ... Genome biology 9 (2), 1-9, 2008	226	2008
Text-mining approaches in molecular biology and biomedicine M Krallinger, RAA Erhardt, A Valencia Drug discovery today 10 (6), 439-445, 2005	210	2005
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7 (1), 1-17, 2015	208	2015
CHEMDNER: The drugs and chemical names extraction challenge M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia Journal of cheminformatics 7 (1), 1-11, 2015	202	2015
Information retrieval and text mining technologies for chemistry M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia Chemical reviews 117 (12), 7673-7761, 2017	193	2017
Evaluation of BioCreAtIvE assessment of task 2 C Blaschke, EA Leon, M Krallinger, A Valencia BMC bioinformatics 6 (1), 1-13, 2005	183	2005
BioC: a minimalist approach to interoperability for biomedical text processing DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ... Database 2013, 2013	182	2013
Text mining for the biocuration workflow L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ... Database 2012, 2012	173	2012
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12 (8), 1-31, 2011	171	2011
Overview of the BioCreative VI chemical-protein interaction Track M Krallinger, O Rabal, SA Akhondi, M Pérez Pérez, J Santamaría, ... Proceedings of the sixth BioCreative challenge evaluation workshop 1, 141-146, 2017	156	2017
An overview of BioCreative II. 5 F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010	134	2010
Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9 (2), 1-15, 2008	128	2008
Overview of the BioCreative III workshop CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ... BMC bioinformatics 12 (8), 1-9, 2011	121	2011
Overview of the CLEF eHealth evaluation lab 2020 L Goeuriot, H Suominen, L Kelly, A Miranda-Escalada, M Krallinger, Z Liu, ... International Conference of the Cross-Language Evaluation Forum for European …, 2020	120	2020
Text mining for metabolic pathways, signaling cascades, and protein networks R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia Science's STKE 2005 (283), pe21-pe21, 2005	119	2005
BioCreative III interactive task: an overview CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ... BMC bioinformatics 12 (8), 1-21, 2011	100	2011
Analysis of biological processes and diseases using text mining approaches M Krallinger, F Leitner, A Valencia Bioinformatics Methods in Clinical Research, 341-382, 2010	95	2010

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