Martin Krallinger
Martin Krallinger
*Head of Text Mining Unit, Barcelona Supercomputing Center (BSC-CNS)
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Overview of the protein-protein interaction annotation extraction task of BioCreative II
M Krallinger, F Leitner, C Rodriguez-Penagos, A Valencia
Genome biology 9 (S2), S4, 2008
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
M Krallinger, A Valencia, L Hirschman
Genome biology 9 (2), 1-14, 2008
Text-mining and information-retrieval services for molecular biology
M Krallinger, A Valencia
Genome biology 6 (7), 224, 2005
Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge
M Krallinger, A Morgan, L Smith, F Leitner, L Tanabe, J Wilbur, ...
Genome biology 9 (2), 1-9, 2008
Text-mining approaches in molecular biology and biomedicine
M Krallinger, RAA Erhardt, A Valencia
Drug discovery today 10 (6), 439-445, 2005
Evaluation of BioCreAtIvE assessment of task 2
C Blaschke, EA Leon, M Krallinger, A Valencia
BMC bioinformatics 6 (S1), S16, 2005
Text mining for the biocuration workflow
L Hirschman, GAP Burns, M Krallinger, C Arighi, KB Cohen, A Valencia, ...
Database 2012, 2012
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text
M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ...
BMC bioinformatics 12 (S8), S3, 2011
BioC: a minimalist approach to interoperability for biomedical text processing
DC Comeau, R Islamaj Doğan, P Ciccarese, KB Cohen, M Krallinger, ...
Database 2013, 2013
CHEMDNER: The drugs and chemical names extraction challenge
M Krallinger, F Leitner, O Rabal, M Vazquez, J Oyarzabal, A Valencia
Journal of cheminformatics 7 (S1), S1, 2015
An overview of BioCreative II. 5
F Leitner, SA Mardis, M Krallinger, G Cesareni, LA Hirschman, A Valencia
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 385-399, 2010
The CHEMDNER corpus of chemicals and drugs and its annotation principles
M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ...
Journal of cheminformatics 7 (1), 1-17, 2015
Text mining for biology-the way forward: opinions from leading scientists
RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ...
Genome biology 9 (S2), S7, 2008
Text mining for metabolic pathways, signaling cascades, and protein networks
R Hoffmann, M Krallinger, E Andres, J Tamames, C Blaschke, A Valencia
Science's STKE 2005 (283), pe21-pe21, 2005
Overview of the BioCreative III workshop
CN Arighi, Z Lu, M Krallinger, KB Cohen, WJ Wilbur, A Valencia, ...
BMC bioinformatics 12 (S8), S1, 2011
Information retrieval and text mining technologies for chemistry
M Krallinger, O Rabal, A Lourenco, J Oyarzabal, A Valencia
Chemical reviews 117 (12), 7673-7761, 2017
BioCreative III interactive task: an overview
CN Arighi, PM Roberts, S Agarwal, S Bhattacharya, G Cesareni, ...
BMC bioinformatics 12 (S8), S4, 2011
Introducing meta-services for biomedical information extraction
F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ...
Genome biology 9 (S2), S6, 2008
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task
CN Arighi, B Carterette, KB Cohen, M Krallinger, WJ Wilbur, P Fey, ...
Database 2013, 2013
Analysis of biological processes and diseases using text mining approaches
M Krallinger, F Leitner, A Valencia
Bioinformatics Methods in Clinical Research, 341-382, 2010
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