Tim Massingham
Tim Massingham
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Geverifieerd e-mailadres voor nanoporetech.com
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
51212007
A high-resolution map of human evolutionary constraint using 29 mammals
K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ...
Nature 478 (7370), 476-482, 2011
9472011
Ensembl's 10th year
P Flicek, BL Aken, B Ballester, K Beal, E Bragin, S Brent, Y Chen, ...
Nucleic acids research 38 (suppl_1), D557-D562, 2010
3412010
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2372007
Detecting amino acid sites under positive selection and purifying selection
T Massingham, N Goldman
Genetics 169 (3), 1753-1762, 2005
2312005
Genomic DNA k-mer spectra: models and modalities
B Chor, D Horn, N Goldman, Y Levy, T Massingham
Genome biology 10 (10), R108, 2009
1532009
Analysing gene function after duplication
T Massingham, LJ Davies, P Lio
Bioessays 23 (10), 873-876, 2001
502001
PhyloSim-Monte Carlo simulation of sequence evolution in the R statistical computing environment
B Sipos, T Massingham, GE Jordan, N Goldman
BMC bioinformatics 12 (1), 1-6, 2011
492011
Experimental design criteria in phylogenetics: where to add taxa
K Geuten, T Massingham, P Darius, E Smets, N Goldman
Systematic biology 56 (4), 609-622, 2007
492007
Relationship between the tissue-specificity of mouse gene expression and the evolutionary origin and function of the proteins
S Freilich, T Massingham, S Bhattacharyya, H Ponstingl, PA Lyons, ...
Genome biology 6 (7), 1-9, 2005
412005
All Your Base: a fast and accurate probabilistic approach to base calling
T Massingham, N Goldman
Genome Biology 13, R13, 0
40*
Experimental Design in Caecilian Systematics: Phylogenetic Information of Mitochondrial Genomes and Nuclear rag1
D San Mauro, DJ Gower, T Massingham, M Wilkinson, R Zardoya, ...
Systematic Biology 58 (4), 425-438, 2009
312009
More on the best evolutionary rate for phylogenetic analysis
S Klopfstein, T Massingham, N Goldman
Systematic biology 66 (5), 769-785, 2017
242017
Relating tissue specialization to the differentiation of expression of singleton and duplicate mouse proteins
S Freilich, T Massingham, E Blanc, L Goldovsky, JM Thornton
Genome biology 7 (10), R89, 2006
242006
Rapidly evolving human promoter regions
MS Taylor, T Massingham, Y Hayashizaki, P Carninci, N Goldman, ...
Nature genetics 40 (11), 1262-1263, 2008
222008
Determination and validation of principal gene products
ML Tress, JJ Wesselink, A Frankish, G López, N Goldman, A Löytynoja, ...
Bioinformatics 24 (1), 11-17, 2008
222008
EDIBLE: experimental design and information calculations in phylogenetics
T Massingham, N Goldman
Bioinformatics 16 (3), 294-295, 2000
202000
An improved protocol for sequencing of repetitive genomic regions and structural variations using mutagenesis and next generation sequencing
B Sipos, T Massingham, AM Stütz, N Goldman
PLoS One 7 (8), e43359, 2012
152012
Realistic simulations reveal extensive sample-specificity of RNA-seq biases
B Sipos, G Slodkowicz, T Massingham, N Goldman
arXiv preprint arXiv:1308.3172, 2013
122013
Statistics of the log-det estimator
T Massingham, N Goldman
Molecular biology and evolution 24 (10), 2277-2285, 2007
122007
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Artikelen 1–20