Jose Rodriguez
Jose Rodriguez
Cardiovascular Proteomics, Spanish National Center for Cardiovascular Research (CNIC)
Geverifieerd e-mailadres voor cnic.es
Titel
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An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
95172012
GENCODE: the reference human genome annotation for The ENCODE Project
J Harrow, A Frankish, JM Gonzalez, E Tapanari, M Diekhans, ...
Genome research 22 (9), 1760-1774, 2012
37752012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
12082011
Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
I Ezkurdia, D Juan, JM Rodriguez, A Frankish, M Diekhans, J Harrow, ...
Human molecular genetics 23 (22), 5866-5878, 2014
5782014
APPRIS: annotation of principal and alternative splice isoforms
JM Rodriguez, P Maietta, I Ezkurdia, A Pietrelli, JJ Wesselink, G Lopez, ...
Nucleic acids research 41 (D1), D110-D117, 2013
1512013
Adjuvant vemurafenib in resected, BRAFV600 mutation-positive melanoma (BRIM8): a randomised, double-blind, placebo-controlled, multicentre, phase 3 trial
M Maio, K Lewis, L Demidov, M Mandalà, I Bondarenko, PA Ascierto, ...
The Lancet Oncology 19 (4), 510-520, 2018
1202018
Interoperability with Moby 1.0-it's better than sharing your toothbrush!
M Wilkinson
Nature Precedings, 1-1, 2008
1072008
Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function
I Ezkurdia, A del Pozo, A Frankish, JM Rodriguez, J Harrow, K Ashman, ...
Molecular biology and evolution 29 (9), 2265-2283, 2012
812012
Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx
F Abascal, A Corvelo, F Cruz, JL Villanueva-Cañas, A Vlasova, ...
Genome biology 17 (1), 1-19, 2016
732016
Most highly expressed protein-coding genes have a single dominant isoform
I Ezkurdia, JM Rodriguez, E Carrillo-de Santa Pau, J Vázquez, A Valencia, ...
Journal of proteome research 14 (4), 1880-1887, 2015
732015
De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome
A Munoz-Mérida, JJ González-Plaza, A Canada, ANAM Blanco, ...
DNA research 20 (1), 93-108, 2013
722013
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
672019
The AMANDA neutrino telescope
EC Andrés, P Askebjer, SW Barwick, RC Bay, L Bergström, A Biron, ...
Nuclear Physics B-Proceedings Supplements 77 (1-3), 474-485, 1999
631999
Alternatively spliced homologous exons have ancient origins and are highly expressed at the protein level
F Abascal, I Ezkurdia, J Rodriguez-Rivas, JM Rodriguez, A del Pozo, ...
PLoS Comput Biol 11 (6), e1004325, 2015
542015
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
482020
APPRIS 2017: principal isoforms for multiple gene sets
JM Rodriguez, J Rodriguez-Rivas, T Di Domenico, J Vázquez, A Valencia, ...
Nucleic acids research 46 (D1), D213-D217, 2018
482018
firestar —advances in the prediction of functionally important residues
G Lopez, P Maietta, JM Rodriguez, A Valencia, ML Tress
Nucleic acids research 39 (suppl_2), W235-W241, 2011
432011
The EMBRACE web service collection
S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
432010
Loose ends: almost one in five human genes still have unresolved coding status
F Abascal, D Juan, I Jungreis, L Martinez, M Rigau, JM Rodriguez, ...
Nucleic acids research 46 (14), 7070-7084, 2018
332018
Evidence for the adaptive significance of an LTR retrotransposon sequence in a Drosophila heterochromatic gene
AM McCollum, EW Ganko, PA Barrass, JM Rodriguez, JF McDonald
BMC evolutionary biology 2 (1), 5, 2002
292002
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Artikelen 1–20