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Salem Malikic
Salem Malikic
Cancer Data Science Laboratory, National Cancer Institute, National Institutes of Health
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1671*2020
The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578 (7793), 122-128, 2020
8362020
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
Cell 184 (8), 2239-2254. e39, 2021
2802021
Clonality inference in multiple tumor samples using phylogeny
S Malikic, AW McPherson, N Donmez, CS Sahinalp
Bioinformatics 31 (9), 1349-1356, 2015
1992015
Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data
S Malikic, K Jahn, J Kuipers, SC Sahinalp, N Beerenwinkel
Nature communications 10 (1), 2750, 2019
1272019
PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data
S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ...
Genome research 29 (11), 1860-1877, 2019
802019
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
I Numanagić, S Malikić, M Ford, X Qin, L Toji, M Radovich, TC Skaar, ...
Nature communications 9 (1), 828, 2018
732018
PCAWG Evolution & Heterogeneity Working Group. PCAWG Consortium The evolutionary history of 2,658 cancers
M Gerstung, C Jolly, I Leshchiner, SC Dentro, S Gonzalez, D Rosebrock, ...
Nature 578, 122-128, 2020
502020
Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types
SC Dentro, I Leshchiner, K Haase, M Tarabichi, J Wintersinger, ...
BioRxiv, 312041, 2018
432018
Cypiripi: exact genotyping of CYP2D6 using high-throughput sequencing data
I Numanagić, S Malikić, VM Pratt, TC Skaar, DA Flockhart, SC Sahinalp
Bioinformatics 31 (12), i27-i34, 2015
422015
A multi-labeled tree dissimilarity measure for comparing “clonal trees” of tumor progression
N Karpov, S Malikic, MK Rahman, SC Sahinalp
Algorithms for Molecular Biology 14, 1-18, 2019
38*2019
Clonality inference from single tumor samples using low coverage sequence data
N Donmez, S Malikic, AW Wyatt, ME Gleave, CC Collins, SC Sahinalp
Research in Computational Molecular Biology: 20th Annual Conference, RECOMB …, 2016
342016
PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem
E Sadeqi Azer, F Rashidi Mehrabadi, S Malikić, XC Li, O Bartok, ...
Bioinformatics 36 (Supplement_1), i169-i176, 2020
192020
Tumor phylogeny topology inference via deep learning
ES Azer, MH Ebrahimabadi, S Malikić, R Khardon, SC Sahinalp
Iscience 23 (11), 2020
162020
Collaborative intra-tumor heterogeneity detection
S Khakabimamaghani, S Malikic, J Tang, D Ding, R Morin, ...
Bioinformatics 35 (14), i379-i388, 2019
132019
Identification of conserved evolutionary trajectories in tumors
E Hodzic, R Shrestha, S Malikic, CC Collins, K Litchfield, S Turajlic, ...
Bioinformatics 36 (Supplement_1), i427-i435, 2020
112020
Profiles of expressed mutations in single cells reveal subclonal expansion patterns and therapeutic impact of intratumor heterogeneity
FR Mehrabadi, KL Marie, E Pérez-Guijarro, S Malikić, ES Azer, HH Yang, ...
bioRxiv, 2021.03. 26.437185, 2021
82021
Pervasive intra-tumour heterogeneity and subclonal selection across cancer types
S Dentro, I Leshchiner, K Haase, J Wintersinger, A Deshwar, M Tarabichi, ...
Cancer Research 78 (13_Supplement), 3000-3000, 2018
72018
Studying the history of tumor evolution from single-cell sequencing data by exploring the space of binary matrices
S Malikić, FR Mehrabadi, ES Azer, MH Ebrahimabadi, SC Sahinalp
Journal of Computational Biology 28 (9), 857-879, 2021
52021
Inference of tumor subclonal composition and evolution by the use of single-cell and bulk DNA sequencing data
S Malikic
Simon Fraser University, 2019
32019
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Articles 1–20