| PLAZA: a comparative genomics resource to study gene and genome evolution in plants S Proost, M Van Bel, L Sterck, K Billiau, T Van Parys, Y Van de Peer, ... The Plant Cell 21 (12), 3718-3731, 2009 | 331 | 2009 |
| GenomeView: a next-generation genome browser T Abeel, T Van Parys, Y Saeys, J Galagan, Y Van de Peer Nucleic Acids Research 40 (2), e12-e12, 2012 | 161 | 2012 |
| The Plant PTM Viewer, a central resource for exploring plant protein modifications P Willems, A Horne, T Van Parys, S Goormachtig, I De Smet, A Botzki, ... The Plant Journal 99 (4), 752-762, 2019 | 102 | 2019 |
| Arabidopsis Ensemble Reverse-Engineered Gene Regulatory Network Discloses Interconnected Transcription Factors in Oxidative Stress V Vermeirssen, I De Clercq, T Van Parys, F Van Breusegem, ... The Plant Cell 26 (12), 4656-4679, 2014 | 74 | 2014 |
| hfAIM: A reliable bioinformatics approach for in silico genome-wide identification of autophagy-associated Atg8-interacting motifs in various organisms Q Xie, O Tzfadia, M Levy, E Weithorn, H Peled-Zehavi, T Van Parys, ... Autophagy 12 (5), 876-887, 2016 | 73 | 2016 |
| Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks SV Landeghem, TV Parys, M Dubois, D Inzé, YV de Peer BMC bioinformatics 17, 1-12, 2016 | 41 | 2016 |
| A Cytoscape app for motif enumeration with ISMAGS T Van Parys, I Melckenbeeck, M Houbraken, P Audenaert, D Colle, ... Bioinformatics 33 (3), 461-463, 2017 | 29 | 2017 |
| CyClus3D: a Cytoscape plugin for clustering network motifs in integrated networks P Audenaert, T Van Parys, F Brondel, M Pickavet, P Demeester, ... Bioinformatics 27 (11), 1587-1588, 2011 | 23 | 2011 |
| U-Compare bio-event meta-service: compatible BioNLP event extraction services Y Kano, J Björne, F Ginter, T Salakoski, E Buyko, U Hahn, KB Cohen, ... BMC bioinformatics 12, 1-9, 2011 | 22 | 2011 |
| Characterizing regulatory path motifs in integrated networks using perturbational data A Joshi, T Van Parys, Y Van de Peer, T Michoel Genome biology 11, 1-14, 2010 | 16 | 2010 |
| Top 10 metrics for life science software good practices H Artaza, NC Hong, M Corpas, A Corpuz, R Hooft, RC Jiménez, ... F1000Research 5, 2016 | 13 | 2016 |
| MorphDB: prioritizing genes for specialized metabolism pathways and gene ontology categories in plants A Zwaenepoel, T Diels, D Amar, T Van Parys, R Shamir, Y Van de Peer, ... Frontiers in Plant Science 9, 352, 2018 | 9 | 2018 |
| Optimising orbit counting of arbitrary order by equation selection I Melckenbeeck, P Audenaert, T Van Parys, Y Van De Peer, D Colle, ... BMC bioinformatics 20, 1-13, 2019 | 8 | 2019 |
| Transcriptional regulatory networks of the abiotic stress response I De Clercq, V Vermeirssen, S Vanderauwera, B van de Cotte, ... Plants have evolved complex regulatory mechanisms in adapting to …, 2013 | | 2013 |
| CyClus3D-Cytoscape plugin for clustering network motifs in integrated networks T Van Parys, P Audenaert, T Michoel | | 2011 |
| Pathicular-Cytoscape plugin for identifying regulatory path motifs in integrated networks A Joshi, T Van Parys, T Michoel | | 2010 |
