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Rachid Ounit
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A chromosome conformation capture ordered sequence of the barley genome
M Mascher, H Gundlach, A Himmelbach, S Beier, SO Twardziok, T Wicker, ...
Nature 544 (7651), 427-433, 2017
11502017
CLARK: fast and accurate classification of metagenomic and genomic sequences using discriminative k-mers
R Ounit, S Wanamaker, TJ Close, S Lonardi
BMC genomics 16 (1), 1-13, 2015
5292015
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
ABR McIntyre, R Ounit, E Afshinnekoo, RJ Prill, E Hénaff, N Alexander, ...
Genome biology 18 (1), 1-19, 2017
2372017
The genome of cowpea (Vigna unguiculata [L.] Walp.)
S Lonardi, M Muñoz‐Amatriaín, Q Liang, S Shu, SI Wanamaker, S Lo, ...
The Plant Journal 98 (5), 767-782, 2019
1992019
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
S Beier, A Himmelbach, C Colmsee, XQ Zhang, RA Barrero, Q Zhang, L Li, ...
Scientific Data 4 (1), 1-24, 2017
1362017
A global metagenomic map of urban microbiomes and antimicrobial resistance
D Danko, D Bezdan, EE Afshin, S Ahsanuddin, C Bhattacharya, DJ Butler, ...
Cell 184 (13), 3376-3393. e17, 2021
1072021
Higher classification sensitivity of short metagenomic reads with CLARK-S
R Ounit, S Lonardi
Bioinformatics 32 (24), 3823-3825, 2016
1062016
Sequencing of 15 622 gene‐bearing BAC s clarifies the gene‐dense regions of the barley genome
M Muñoz‐Amatriaín, S Lonardi, MC Luo, K Madishetty, JT Svensson, ...
The Plant Journal 84 (1), 216-227, 2015
422015
rasbhari: Optimizing Spaced Seeds for Database Searching, Read Mapping and Alignment-Free Sequence Comparison
L Hahn, CA Leimeister, R Ounit, S Lonardi, B Morgenstern
PLoS Comput Biol 12 (10), e1005107, 2016
352016
Global genetic cartography of urban metagenomes and anti-microbial resistance
D Danko, D Bezdan, E Afshinnekoo, S Ahsanuddin, C Bhattacharya, ...
BioRxiv, 724526, 2020
312020
Metagenomic characterization of ambulances across the USA
NB O’Hara, HJ Reed, E Afshinnekoo, D Harvin, N Caplan, G Rosen, ...
Microbiome 5 (1), 1-20, 2017
312017
BRAT-nova: Fast and accurate mapping of bisulfite-treated reads
EY Harris, R Ounit, S Lonardi
Bioinformatics, btw226, 2016
202016
Higher classification accuracy of short metagenomic reads by discriminative spaced k-mers
R Ounit, S Lonardi
International Workshop on Algorithms in Bioinformatics, 286-295, 2015
142015
Assembly of eleven pseudomolecules representing the cowpea genome sequence
S Lonardi, T Zhu, M Muñoz-Amatriaín, Q Liang, S Wanamaker, R Ounit, ...
Plant and Animal Genome 25, P0688, 2017
72017
Systems and methods for ultra-fast identification and abundance estimates of microorganisms using a kmer-depth based approach and privacy-preserving protocols
NB O'hara, R Ounit
US Patent App. 16/345,367, 2019
42019
Characterization of spacesuit associated microbial communities and their implications for NASA missions
D Danko, GB Malli Mohan, MA Sierra, M Rucker, NK Singh, AB Regberg, ...
Frontiers in Microbiology 12, 608478, 2021
32021
Genome Resources for Cowpea (Vigna unguiculata [L.] Walp)
M Muñoz-Amatriain, S Lonardi, Q Liang, S Shu, S Wanamaker, S Lo, ...
Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019
32019
Ozone treatment for elimination of bacteria and SARS-CoV-2 for medical environments
C Westover, S Rahmatulloev, D Danko, E Afshinnekoo, NB O’Hara, ...
BioRxiv, 420737, 2018
32018
Ozone Disinfection for Elimination of Bacteria and Degradation of SARS-CoV2 RNA for Medical Environments
C Westover, S Rahmatulloev, D Danko, EE Afshin, NB O’Hara, R Ounit, ...
Genes 14 (1), 85, 2023
2023
A Metagenomic Analysis of Environmental and Clinical Samples Using a Secure Hybrid Cloud Solution
R Ounit, C Mason, S Lonardi, N O'Hara
Journal of Biomolecular Techniques: JBT 30 (Suppl), S2, 2019
2019
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