Alon Shaiber
Alon Shaiber
PhD Candidate, University of Chicago
Verified email at uchicago.edu
Title
Cited by
Cited by
Year
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature Microbiology 3 (7), 804-813, 2018
2012018
Accurate and complete genomes from metagenomes
LX Chen, K Anantharaman, A Shaiber, AM Eren, JF Banfield
Genome research 30 (3), 315-333, 2020
582020
Shotgun transcriptome and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, A Shaiber, ...
BioRxiv, 2020
522020
Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics
STM Lee, SA Kahn, TO Delmont, A Shaiber, ÖC Esen, NA Hubert, ...
Microbiome 5 (1), 1-10, 2017
412017
Gut microbes contribute to variation in solid organ transplant outcomes in mice
CM McIntosh, L Chen, A Shaiber, AM Eren, ML Alegre
Microbiome 6 (1), 1-12, 2018
322018
Composite metagenome-assembled genomes reduce the quality of public genome repositories
A Shaiber, AM Eren
MBio 10 (3), 2019
282019
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
242020
Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses
DJ Butler, C Mozsary, C Meydan, D Danko, J Foox, J Rosiene, CE Mason
Viral Diversification, and Drug Interactions. bioRxiv 2020 (20.048066), 2020
202020
The Wolbachia mobilome in Culex pipiens includes a putative plasmid
J Reveillaud, SR Bordenstein, C Cruaud, A Shaiber, ÖC Esen, M Weill, ...
Nature communications 10 (1), 1-11, 2019
182019
Host, viral, and environmental transcriptome profiles of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
DJ Butler, C Mozsary, C Meydan, DC Danko, J Foox, J Rosiene, ...
bioRxiv, 2020
152020
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in the surface ocean
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, S Lücker, AM Eren
BioRxiv, 129791, 2017
142017
Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes. Nat Microbiol 3: 804–813
TO Delmont, C Quince, A Shaiber, ÖC Esen, ST Lee, MS Rappé, ...
132018
Composite metagenome-assembled genomes reduce the quality of public genome repositories. mBio 10: e00725-19
A Shaiber, AM Eren, A Shaiber, AM Eren
62019
Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome
A Shaiber, AD Willis, TO Delmont, S Roux, LX Chen, AC Schmid, ...
Genome biology 21 (1), 1-35, 2020
52020
Nitrogen-Fixing Populations Of Planctomycetes And Proteobacteria Are Abundant In The Surface Ocean. bioRxiv 129791
TO Delmont, C Quince, A Shaiber, OC Esen, STM Lee, S Lucker
52017
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1-17, 2021
32021
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
32021
Author Correction: Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
TO Delmont, C Quince, A Shaiber, ÖC Esen, STM Lee, MS Rappé, ...
Nature microbiology 3 (8), 963-963, 2018
22018
A simple approach to spectrally resolved fluorescence and bright field microscopy over select regions of interest
PD Dahlberg, CT Boughter, NF Faruk, L Hong, YH Koh, MA Reyer, ...
Review of Scientific Instruments 87 (11), 113704, 2016
22016
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
J Park, J Foox, T Hether, A Beheshti, A Saravia-Butler, U Singh, ...
bioRxiv, 2021
2021
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