| A fast likelihood method to reconstruct and visualize ancestral scenarios SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel Molecular biology and evolution 36 (9), 2069-2085, 2019 | 172 | 2019 |
| Palpitomonas bilix represents a basal cryptist lineage: insight into the character evolution in Cryptista A Yabuki, R Kamikawa, SA Ishikawa, M Kolisko, E Kim, AS Tanabe, ... Scientific reports 4 (1), 4641, 2014 | 75 | 2014 |
| Ungulate malaria parasites TJ Templeton, M Asada, M Jiratanh, SA Ishikawa, S Tiawsirisup, ... Scientific Reports 6 (1), 23230, 2016 | 54 | 2016 |
| Gene Content Evolution in Discobid Mitochondria Deduced from the Phylogenetic Position and Complete Mitochondrial Genome of Tsukubamonas globosa R Kamikawa, M Kolisko, Y Nishimura, A Yabuki, MW Brown, SA Ishikawa, ... Genome biology and evolution 6 (2), 306-315, 2014 | 50 | 2014 |
| Proposal of a twin aarginine translocator system-mediated constraint against loss of ATP synthase genes from nonphotosynthetic plastid genomes R Kamikawa, G Tanifuji, SA Ishikawa, KI Ishii, Y Matsuno, NT Onodera, ... Molecular Biology and Evolution 32 (10), 2598-2604, 2015 | 46 | 2015 |
| Global Kinetoplastea phylogeny inferred from a large-scale multigene alignment including parasitic species for better understanding transitions from a free-living to a … E Yazaki, SA Ishikawa, K Kume, A Kumagai, T Kamaishi, G Tanifuji, ... Genes & genetic systems 92 (1), 35-42, 2017 | 34 | 2017 |
| RY-coding and non-homogeneous models can ameliorate the maximum-likelihood inferences from nucleotide sequence data with parallel compositional heterogeneity SA Ishikawa, Y Inagaki, T Hashimoto Evolutionary Bioinformatics 8, EBO. S9017, 2012 | 34 | 2012 |
| Multigene phylogenetic analyses including diverse radiolarian species support the “Retaria” hypothesis—The sister relationship of Radiolaria and Foraminifera Y Ishitani, SA Ishikawa, Y Inagaki, M Tsuchiya, K Takahashi, K Takishita Marine Micropaleontology 81 (1-2), 32-42, 2011 | 26 | 2011 |
| A deviant genetic code in the green alga-derived plastid in the dinoflagellate Lepidodinium chlorophorum T Matsumoto, SA Ishikawa, T Hashimoto, Y Inagaki Molecular phylogenetics and evolution 60 (1), 68-72, 2011 | 23 | 2011 |
| New records and molecular characterization of Acrozoanthus (Cnidaria: Anthozoa: Hexacorallia) and its endosymbionts (Symbiodinium spp.) from Taiwan J Davis Reimer, SA Ishikawa, M Hirose Marine Biodiversity 41, 313-323, 2011 | 20 | 2011 |
| Identification of a bacteria-like ferrochelatase in Strongyloides venezuelensis, an animal parasitic nematode E Nagayasu, SA Ishikawa, S Taketani, G Chakraborty, A Yoshida, ... PloS one 8 (3), e58458, 2013 | 12 | 2013 |
| Ungulate malaria parasites. Sci Rep 6: 23230 TJ Templeton, M Asada, M Jiratanh, SA Ishikawa, S Tiawsirisup, ... | 9 | 2016 |
| Multiple conversion between the genes encoding bacterial class-I release factors SA Ishikawa, R Kamikawa, Y Inagaki Scientific Reports 5 (1), 12406, 2015 | 1 | 2015 |
| How to Reconstruct Accurate Phylogenetic Trees from Nucleotide Sequence Data with Extraordinary Compositional Bias: Assessment of the Performance of Data-Recoding Methods and … 石川奏太 | | 2015 |
| MPI/OpenMP HYBRID Parallelization of Phylogenetic Analyses based on Non-Homogeneous Substitution Models:Implementation and Performance Evaluation for Large-Scale Computing Systems. SA Ishikawa, M Nakao, I Yuji, T Hashimoto, M Sato IPSJ Transactions on Advanced Computing Systems 7 (3), 13-24, 2014 | | 2014 |
| Hybrid MPI/OpenMP parallelization of a phylogenetic program with Non-Homogeneous models: toward the analyses of large-scale sequence datasets. SA Ishikawa, M Nakao, Y Inagaki, T Hashimoto, M Sato High Performance Computing Symposium 2014, 10-20, 2014 | | 2014 |
| Microscopic observation of laminated sediment in thin section using diatom assemblages to reconstruct annual paleoenvironmental changes S Ishikawa, K Kaoru AGU Fall Meeting Abstracts 2013, PP11C-1843, 2013 | | 2013 |
| Assessment of the performance of phylogenetic inference based on simulated protein-coding sequences with significant compositional heterogeneity SA Ishikawa, T Hashimoto 統計数理 60 (2), 289-303, 2012 | | 2012 |
Yuji InagakiProfessor of Center of Computational Sciences, University of TsukubaGeverifieerd e-mailadres voor ccs.tsukuba.ac.jp
