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Shubhada R. Kulkarni
Shubhada R. Kulkarni
Postdoctoral Researcher, Uniklinik Heidelberg
Verified email at uni-heidelberg.de
Title
Cited by
Cited by
Year
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
A Khan, O Fornes, A Stigliani, M Gheorghe, JA Castro-Mondragon, ...
Nucleic acids research 46 (D1), D260-D266, 2018
16022018
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
SR Kulkarni, D Vaneechoutte, J Van de Velde, K Vandepoele
Nucleic acids research 46 (6), e31-e31, 2018
1192018
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development
J Van Leene, J Blomme, SR Kulkarni, B Cannoot, N De Winne, ...
Journal of experimental botany, erw347, 2016
772016
A spatial vascular transcriptomic, proteomic, and phosphoproteomic atlas unveils an angiocrine Tie–Wnt signaling axis in the liver
D Inverso, J Shi, KH Lee, M Jakab, S Ben-Moshe, SR Kulkarni, ...
Developmental cell 56 (11), 1677-1693. e10, 2021
672021
Temporal multi-omics identifies LRG1 as a vascular niche instructor of metastasis
M Singhal, N Gengenbacher, AA Abdul Pari, M Kamiyama, L Hai, ...
Science translational medicine 13 (609), eabe6805, 2021
402021
Inference of plant gene regulatory networks using data-driven methods: A practical overview
SR Kulkarni, K Vandepoele
Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1863 (6), 194447, 2020
322020
Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data
SR Kulkarni, DM Jones, K Vandepoele
Plant physiology 181 (2), 412-425, 2019
262019
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
J Vercruysse, M Van Bel, CM Osuna‐Cruz, SR Kulkarni, V Storme, ...
Plant biotechnology journal 18 (2), 553-567, 2020
242020
GSyellow, a Multifaceted Tag for Functional Protein Analysis in Monocot and Dicot Plants
N Besbrugge, J Van Leene, D Eeckhout, B Cannoot, SR Kulkarni, ...
Plant Physiology 177 (2), 447-464, 2018
242018
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)
K De Schutter, M Tsaneva, SR Kulkarni, P Rougé, K Vandepoele, ...
Rice 10, 1-19, 2017
222017
Lung endothelium exploits susceptible tumor cell states to instruct metastatic latency
M Jakab, KH Lee, A Uvarovskii, S Ovchinnikova, SR Kulkarni, S Jakab, ...
Nature Cancer, 1-15, 2024
22024
Lung endothelium instructs dormancy of susceptible metastatic tumour cells
M Jakab, KH Lee, A Uvarovskii, S Ovchinnikova, SR Kulkarni, T Rostalski, ...
bioRxiv, 2022.06. 18.496680, 2022
22022
Concerted action of miRNA targets enables defense reprogramming upon pathogen-induced RNA silencing
L Villar-Martín, S Kulkarni, C Cáceres-Moreno, T Jiménez-Gongora, ...
2022
Enhanced TF binding site maps improve regulatory networks learned from accessible chromatin data
SR Kulkarni, DM Jones, K Vandepoele
bioRxiv, 545780, 2019
2019
Delineating gene regulatory networks in Arabidopsis thaliana
SR Kulkarni
Ghent University, 2019
2019
Erratum. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
R van der Lee, B Ballester, F Parcy, A Khan, O Fornés, A Stigliani, ...
2018
AUTHOR CONTRIBUTIONS
SR Kulkarni, DM Jones, K Vandepoele
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Articles 1–17