| Face mask use in the general population and optimal resource allocation during the COVID-19 pandemic CJ Worby, HH Chang Nature communications 11 (1), 4049, 2020 | 347 | 2020 |
| Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data CJ Worby, M Lipsitch, WP Hanage PLoS computational biology 10 (3), e1003549, 2014 | 170 | 2014 |
| On the relative role of different age groups in influenza epidemics CJ Worby, SS Chaves, J Wallinga, M Lipsitch, L Finelli, E Goldstein Epidemics 13, 10-16, 2015 | 163 | 2015 |
| Shared genomic variants: identification of transmission routes using pathogen deep-sequence data CJ Worby, M Lipsitch, WP Hanage American journal of epidemiology 186 (10), 1209-1216, 2017 | 98 | 2017 |
| THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites HH Chang, CJ Worby, A Yeka, J Nankabirwa, MR Kamya, SG Staedke, ... PLoS computational biology 13 (1), e1005348, 2017 | 92 | 2017 |
| Bayesian reconstruction of transmission within outbreaks using genomic variants N De Maio, CJ Worby, DJ Wilson, N Stoesser PLoS computational biology 14 (4), e1006117, 2018 | 75 | 2018 |
| Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women CJ Worby, HL Schreiber IV, TJ Straub, LR van Dijk, RA Bronson, ... Nature microbiology 7 (5), 630-639, 2022 | 66 | 2022 |
| Reconstructing transmission trees for communicable diseases using densely sampled genetic data CJ Worby, PD O'Neill, T Kypraios, JV Robotham, D De Angelis, ... The annals of applied statistics 10 (1), 395, 2016 | 65 | 2016 |
| Microbial genomics of ancient plagues and outbreaks CP Andam, CJ Worby, Q Chang, MG Campana Trends in microbiology 24 (12), 978-990, 2016 | 59 | 2016 |
| Estimating the Effectiveness of Isolation and Decolonization Measures in Reducing Transmission of Methicillin-resistant Staphylococcus aureus in Hospital General … CJ Worby, D Jeyaratnam, JV Robotham, T Kypraios, PD O'neill, ... American journal of Epidemiology 177 (11), 1306-1313, 2013 | 57 | 2013 |
| Estimating the Effectiveness of Isolation and Decolonization Measures in Reducing Transmission of Methicillin-resistant Staphylococcus aureus in Hospital General … CJ Worby, D Jeyaratnam, JV Robotham, T Kypraios, PD O'neill, ... American journal of Epidemiology 177 (11), 1306-1313, 2013 | 57 | 2013 |
| The distribution of pairwise genetic distances: a tool for investigating disease transmission CJ Worby, HH Chang, WP Hanage, M Lipsitch Genetics 198 (4), 1395-1404, 2014 | 51 | 2014 |
| On the relative role of different age groups during epidemics associated with respiratory syncytial virus E Goldstein, HH Nguyen, P Liu, C Viboud, CA Steiner, CJ Worby, ... The Journal of infectious diseases 217 (2), 238-244, 2018 | 41 | 2018 |
| Impact of mupirocin resistance on the transmission and control of healthcare-associated MRSA SR Deeny, CJ Worby, O Tosas Auguet, BS Cooper, J Edgeworth, ... Journal of Antimicrobial Chemotherapy 70 (12), 3366-3378, 2015 | 41 | 2015 |
| StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities LR van Dijk, BJ Walker, TJ Straub, CJ Worby, A Grote, HL Schreiber IV, ... Genome biology 23 (1), 74, 2022 | 40 | 2022 |
| Acquisition of antibiotic-resistant bacteria by US international travelers G Mellon, SE Turbett, C Worby, E Oliver, AT Walker, M Walters, P Kelly, ... New England Journal of Medicine 382 (14), 1372-1374, 2020 | 26 | 2020 |
| Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus HH Chang, J Dordel, T Donker, CJ Worby, EJ Feil, WP Hanage, ... Genome medicine 8, 1-10, 2016 | 26 | 2016 |
| 'SEEDY'(Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens CJ Worby, TD Read PloS one 10 (6), e0129745, 2015 | 26 | 2015 |
| Acquisition and long-term carriage of multidrug-resistant organisms in US international travelers CJ Worby, AM Earl, SE Turbett, M Becker, SR Rao, E Oliver, ... Open Forum Infectious Diseases 7 (12), ofaa543, 2020 | 24 | 2020 |
| Penicillin resistance of nonvaccine type pneumococcus before and after PCV13 introduction, United States CP Andam, CJ Worby, R Gierke, L McGee, T Pilishvili, WP Hanage Emerging infectious diseases 23 (6), 1012, 2017 | 24 | 2017 |
