Jari Björne
Jari Björne
Post-doctoral researcher, University of Turku, Finland
Geverifieerd e-mailadres voor utu.fi
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A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
8282013
BioInfer: a corpus for information extraction in the biomedical domain
S Pyysalo, F Ginter, J Heimonen, J Björne, J Boberg, J Järvinen, ...
BMC bioinformatics 8 (1), 1-24, 2007
4942007
All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
BMC bioinformatics 9 (11), 1-12, 2008
3402008
Comparative analysis of five protein-protein interaction corpora
S Pyysalo, A Airola, J Heimonen, J Björne, F Ginter, T Salakoski
BMC bioinformatics 9 (3), 1-11, 2008
2672008
Extracting complex biological events with rich graph-based feature sets
J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, 10-18, 2009
2422009
Complex event extraction at PubMed scale
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Bioinformatics 26 (12), i382-i390, 2010
1422010
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
1402019
Generalizing biomedical event extraction
J Björne, T Salakoski
Proceedings of BioNLP Shared Task 2011 Workshop, 183-191, 2011
1352011
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
1192013
TEES 2.1: Automated annotation scheme learning in the BioNLP 2013 Shared Task
J Björne, T Salakoski
Proceedings of the BioNLP Shared Task 2013 Workshop, 16-25, 2013
1182013
A graph kernel for protein-protein interaction extraction
A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter, T Salakoski
Proceedings of the workshop on current trends in biomedical natural language …, 2008
1142008
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge
J Björne, S Kaewphan, T Salakoski
Second Joint Conference on Lexical and Computational Semantics (*SEM …, 2013
912013
University of Turku in the BioNLP'11 shared task
J Björne, F Ginter, T Salakoski
BMC bioinformatics 13 (11), 1-13, 2012
722012
Extracting contextualized complex biological events with rich graph-based feature sets
J Björne, J Heimonen, F Ginter, A Airola, T Pahikkala, T Salakoski
Computational Intelligence 27 (4), 541-557, 2011
522011
Biomedical event extraction using convolutional neural networks and dependency parsing
J Björne, T Salakoski
Proceedings of the BioNLP 2018 workshop, 98-108, 2018
432018
Deep learning with minimal training data: TurkuNLP entry in the BioNLP shared task 2016
F Mehryary, J Björne, S Pyysalo, T Salakoski, F Ginter
Proceedings of the 4th BioNLP shared task workshop, 73-81, 2016
382016
Scaling up biomedical event extraction to the entire PubMed
J Björne, F Ginter, S Pyysalo, J Tsujii, T Salakoski
Proceedings of the 2010 workshop on biomedical natural language processing …, 2010
382010
Drug-Drug Interaction Extraction from Biomedical Texts with SVM and RLS Classifiers
J Björne, A Airola, T Pahikkala, T Salakoski
Proceedings of the 1st Challenge Task on Drug-Drug Interaction Extraction …, 2011
372011
TEES 2.2: biomedical event extraction for diverse corpora
J Björne, T Salakoski
BMC bioinformatics 16 (16), 1-20, 2015
282015
Biomedical Event Extraction with Machine Learning
J Björne
TUCS Dissertations, 2014
272014
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Artikelen 1–20