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Yi-Kuo Yu
Yi-Kuo Yu
Senior Investigator, NCBI/NLM/NIH
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
Protein database searches using compositionally adjusted substitution matrices
SF Altschul, JC Wootton, EM Gertz, R Agarwala, A Morgulis, AA Schäffer, ...
The FEBS journal 272 (20), 5101-5109, 2005
11432005
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
EM Gertz, YK Yu, R Agarwala, AA Schäffer, SF Altschul
BMC biology 4 (1), 41, 2006
3912006
Heat conduction process on community networks as a recommendation model
YC Zhang, M Blattner, YK Yu
Physical review letters 99 (15), 154301, 2007
3342007
Information filtering via iterative refinement
P Laureti, L Moret, YC Zhang, YK Yu
EPL (Europhysics Letters) 75 (6), 1006, 2006
1822006
PSI-BLAST pseudocounts and the minimum description length principle
SF Altschul, EM Gertz, R Agarwala, AA Schäffer, YK Yu
Nucleic acids research 37 (3), 815-824, 2008
1382008
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
YK Yu, SF Altschul
Bioinformatics 21 (7), 902-911, 2004
1132004
The Compositional Adjustment of Amino Acid Substitution Matrices
YK Yu, J Wootton, S Altschul
APS 2004, A9. 001, 2004
1092004
The compositional adjustment of amino acid substitution matrices
YK Yu, JC Wootton, SF Altschul
Proceedings of the National Academy of Sciences 100 (26), 15688-15693, 2003
1092003
Enhancing peptide identification confidence by combining search methods
G Alves, WW Wu, G Wang, RF Shen, YK Yu
Journal of proteome research 7 (8), 3102-3113, 2008
862008
The construction and use of log-odds substitution scores for multiple sequence alignment
SF Altschul, JC Wootton, E Zaslavsky, YK Yu
PLoS computational biology 6 (7), e1000852, 2010
702010
Magnetic signatures of ferromagnetic polarons in : Colossal magnetoresistance is not a Griffiths singularity
JA Souza, JJ Neumeier, YK Yu
Physical Review B 78 (1), 014436, 2008
672008
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
YK Yu, EM Gertz, R Agarwala, AA Schäffer, SF Altschul
Nucleic Acids Research 34 (20), 5966-5973, 2006
642006
Decoding information from noisy, redundant, and intentionally distorted sources
YK Yu, YC Zhang, P Laureti, L Moret
Physica A: Statistical Mechanics and its Applications 371 (2), 732-744, 2006
632006
Dimensional Crossover in the Purple Bronze
CAM Dos Santos, BD White, YK Yu, JJ Neumeier, JA Souza
Physical review letters 98 (26), 266405, 2007
582007
Method for analyzing second-order phase transitions: Application to the ferromagnetic transition of a polaronic system
JA Souza, YK Yu, JJ Neumeier, H Terashita, RF Jardim
Physical review letters 94 (20), 207209, 2005
582005
Statistical significance of probabilistic sequence alignment and related local hidden Markov models
YK Yu, T Hwa
Journal of Computational Biology 8 (3), 249-282, 2001
572001
Information flow in interaction networks
A Stojmirović, YK Yu
Journal of Computational Biology 14 (8), 1115-1143, 2007
462007
Energy of an electrorheological solid calculated with inclusion of higher multipoles
R Friedberg, YK Yu
Physical Review B 46 (10), 6582, 1992
451992
Energy of an electrorheological solid calculated with inclusion of higher multipoles
R Friedberg, YK Yu
Physical Review B 46 (10), 6582, 1992
451992
Interfacial kinetic roughening with correlated noise
NN Pang, YK Yu, T Halpin-Healy
Physical Review E 52 (3), 3224, 1995
431995
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