Yi-Kuo Yu
Yi-Kuo Yu
Senior Investigator, NCBI/NLM/NIH
Verified email at - Homepage
Cited by
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Protein database searches using compositionally adjusted substitution matrices
SF Altschul, JC Wootton, EM Gertz, R Agarwala, A Morgulis, AA Schäffer, ...
The FEBS journal 272 (20), 5101-5109, 2005
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
EM Gertz, YK Yu, R Agarwala, AA Schäffer, SF Altschul
BMC biology 4 (1), 41, 2006
Heat conduction process on community networks as a recommendation model
YC Zhang, M Blattner, YK Yu
Physical review letters 99 (15), 154301, 2007
Information filtering via iterative refinement
P Laureti, L Moret, YC Zhang, YK Yu
EPL (Europhysics Letters) 75 (6), 1006, 2006
PSI-BLAST pseudocounts and the minimum description length principle
SF Altschul, EM Gertz, R Agarwala, AA Schäffer, YK Yu
Nucleic acids research 37 (3), 815-824, 2008
The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions
YK Yu, SF Altschul
Bioinformatics 21 (7), 902-911, 2004
The Compositional Adjustment of Amino Acid Substitution Matrices
YK Yu, J Wootton, S Altschul
APS 2004, A9. 001, 2004
The compositional adjustment of amino acid substitution matrices
YK Yu, JC Wootton, SF Altschul
Proceedings of the National Academy of Sciences 100 (26), 15688-15693, 2003
Enhancing peptide identification confidence by combining search methods
G Alves, WW Wu, G Wang, RF Shen, YK Yu
Journal of proteome research 7 (8), 3102-3113, 2008
The construction and use of log-odds substitution scores for multiple sequence alignment
SF Altschul, JC Wootton, E Zaslavsky, YK Yu
PLoS computational biology 6 (7), e1000852, 2010
Magnetic signatures of ferromagnetic polarons in : Colossal magnetoresistance is not a Griffiths singularity
JA Souza, JJ Neumeier, YK Yu
Physical Review B 78 (1), 014436, 2008
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
YK Yu, EM Gertz, R Agarwala, AA Schäffer, SF Altschul
Nucleic Acids Research 34 (20), 5966-5973, 2006
Decoding information from noisy, redundant, and intentionally distorted sources
YK Yu, YC Zhang, P Laureti, L Moret
Physica A: Statistical Mechanics and its Applications 371 (2), 732-744, 2006
Dimensional Crossover in the Purple Bronze
CAM Dos Santos, BD White, YK Yu, JJ Neumeier, JA Souza
Physical review letters 98 (26), 266405, 2007
Method for analyzing second-order phase transitions: Application to the ferromagnetic transition of a polaronic system
JA Souza, YK Yu, JJ Neumeier, H Terashita, RF Jardim
Physical review letters 94 (20), 207209, 2005
Statistical significance of probabilistic sequence alignment and related local hidden Markov models
YK Yu, T Hwa
Journal of Computational Biology 8 (3), 249-282, 2001
Information flow in interaction networks
A Stojmirović, YK Yu
Journal of Computational Biology 14 (8), 1115-1143, 2007
Energy of an electrorheological solid calculated with inclusion of higher multipoles
R Friedberg, YK Yu
Physical Review B 46 (10), 6582, 1992
Energy of an electrorheological solid calculated with inclusion of higher multipoles
R Friedberg, YK Yu
Physical Review B 46 (10), 6582, 1992
Interfacial kinetic roughening with correlated noise
NN Pang, YK Yu, T Halpin-Healy
Physical Review E 52 (3), 3224, 1995
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