| DEEPre: sequence-based enzyme EC number prediction by deep learning Y Li, S Wang, R Umarov, B Xie, M Fan, L Li, X Gao Bioinformatics 34 (5), 760-769, 2018 | 268 | 2018 |
| Characterizing the tumor microenvironment of metastatic ovarian cancer by single-cell transcriptomics S Olalekan, B Xie, R Back, H Eckart, A Basu Cell reports 35 (8), 2021 | 86 | 2021 |
| Systematic comparison of high-throughput single-cell and single-nucleus transcriptomes during cardiomyocyte differentiation A Selewa, R Dohn, H Eckart, S Lozano, B Xie, E Gauchat, R Elorbany, ... Scientific reports 10 (1), 1535, 2020 | 86 | 2020 |
| Bacteroidota and Lachnospiraceae integration into the gut microbiome at key time points in early life are linked to infant neurodevelopment K Oliphant, M Ali, M D’Souza, PD Hughes, D Sulakhe, AZ Wang, B Xie, ... Gut Microbes 13 (1), 1997560, 2021 | 45 | 2021 |
| Lynx: a database and knowledge extraction engine for integrative medicine D Sulakhe, S Balasubramanian, B Xie, B Feng, A Taylor, S Wang, ... Nucleic acids research 42 (D1), D1007-D1012, 2014 | 44 | 2014 |
| XPO1 inhibitor selinexor overcomes intrinsic ibrutinib resistance in mantle cell lymphoma via nuclear retention of IκB M Ming, W Wu, B Xie, M Sukhanova, W Wang, S Kadri, S Sharma, J Lee, ... Molecular cancer therapeutics 17 (12), 2564-2574, 2018 | 39 | 2018 |
| Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources D Sulakhe, M D’Souza, S Wang, S Balasubramanian, P Athri, B Xie, ... Briefings in bioinformatics 20 (5), 1754-1768, 2019 | 29 | 2019 |
| Disease gene prioritization using network and feature B Xie, G Agam, S Balasubramanian, J Xu, TC Gilliam, N Maltsev, ... Journal of Computational Biology 22 (4), 313-323, 2015 | 18 | 2015 |
| mDrop-Seq: Massively Parallel Single-Cell RNA-Seq of Saccharomyces cerevisiae and Candida albicans R Dohn, B Xie, R Back, A Selewa, H Eckart, RP Rao, A Basu Vaccines 10 (1), 30, 2021 | 17 | 2021 |
| Unique somatic variants in DNA from urine exosomes of individuals with bladder cancer X Zhou, P Kurywchak, K Wolf-Dennen, SPY Che, D Sulakhe, M D’Souza, ... Molecular Therapy-Methods & Clinical Development 22, 360-376, 2021 | 16 | 2021 |
| The functional domains for Bax∆ 2 aggregate-mediated caspase 8-dependent cell death A Mañas, S Wang, A Nelson, J Li, Y Zhao, H Zhang, A Davis, B Xie, ... Experimental cell research 359 (2), 342-355, 2017 | 16 | 2017 |
| High-throughput translational medicine: challenges and solutions D Sulakhe, S Balasubramanian, B Xie, E Berrocal, B Feng, A Taylor, ... Systems Analysis of Human Multigene Disorders, 39-67, 2014 | 15 | 2014 |
| Absence of gut microbiota is associated with RPE/choroid transcriptomic changes related to age-related macular degeneration pathobiology and decreased choroidal neovascularization JY Zhang, B Xie, H Barba, U Nadeem, A Movahedan, N Deng, M Spedale, ... International journal of molecular sciences 23 (17), 9676, 2022 | 13 | 2022 |
| High-fat diet alters the retinal transcriptome in the absence of gut microbiota D Dao, B Xie, U Nadeem, J Xiao, A Movahedan, M D’souza, V Leone, ... Cells 10 (8), 2119, 2021 | 12 | 2021 |
| High throughput RNA sequencing of germ-free mouse retina reveals metabolic pathways involved in the gut-retina axis U Nadeem, B Xie, A Movahedan, M D’Souza, H Barba, N Deng, ... bioRxiv, 2020.10. 01.318949, 2020 | 12 | 2020 |
| A machine learning based lecture video segmentation and indexing algorithm D Ma, B Xie, G Agam Document recognition and retrieval XXI 9021, 300-307, 2014 | 11 | 2014 |
| Engineered exosomes targeting MYC reverse the proneural-mesenchymal transition and extend survival of glioblastoma AR Haltom, WE Hassen, J Hensel, J Kim, H Sugimoto, B Li, ... Extracellular vesicle 1, 100014, 2022 | 10 | 2022 |
| Using advanced bioinformatics tools to identify novel therapeutic candidates for age-related macular degeneration U Nadeem, B Xie, EF Xie, M D'Souza, D Dao, D Sulakhe, D Skondra Translational Vision Science & Technology 11 (8), 10-10, 2022 | 10 | 2022 |
| A roadmap for the human gut cell atlas M Zilbauer, KR James, M Kaur, S Pott, Z Li, A Burger, JR Thiagarajah, ... Nature Reviews Gastroenterology & Hepatology 20 (9), 597-614, 2023 | 9 | 2023 |
| Chemokine expression in the early response to injury in human airway epithelial cells B Xie, B Laxman, S Hashemifar, R Stern, TC Gilliam, N Maltsev, SR White PLoS One 13 (3), e0193334, 2018 | 9 | 2018 |
