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Anne-Katrin Emde
Anne-Katrin Emde
Variant Bio
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Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program
D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ...
Nature 590 (7845), 290-299, 2021
13532021
Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma
JN Honeyman, EP Simon, N Robine, R Chiaroni-Clarke, DG Darcy, ...
Science 343 (6174), 1010-1014, 2014
4732014
Comparative sequencing analysis reveals high genomic concordance between matched primary and metastatic colorectal cancer lesions
AR Brannon, E Vakiani, BE Sylvester, SN Scott, G McDermott, RH Shah, ...
Genome biology 15, 1-10, 2014
3652014
X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes
H Hu, SA Haas, J Chelly, H Van Esch, M Raynaud, APM de Brouwer, ...
Molecular psychiatry 21 (1), 133-148, 2016
3102016
Whole-exome sequencing of metastatic cancer and biomarkers of treatment response
H Beltran, K Eng, JM Mosquera, A Sigaras, A Romanel, H Rennert, ...
JAMA oncology 1 (4), 466-474, 2015
3062015
RazerS—fast read mapping with sensitivity control
D Weese, AK Emde, T Rausch, A Döring, K Reinert
Genome research 19 (9), 1646-1654, 2009
2082009
Human papillomavirus and the landscape of secondary genetic alterations in oral cancers
ML Gillison, K Akagi, W Xiao, B Jiang, RKL Pickard, J Li, BJ Swanson, ...
Genome research 29 (1), 1-17, 2019
1922019
Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs
K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ...
Cell 183 (1), 197-210. e32, 2020
1702020
Genome-wide somatic variant calling using localized colored de Bruijn graphs
G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ...
Communications biology 1 (1), 20, 2018
1022018
A novel and well-defined benchmarking method for second generation read mapping
M Holtgrewe, AK Emde, D Weese, K Reinert
BMC bioinformatics 12, 1-10, 2011
1022011
PGBD5 promotes site-specific oncogenic mutations in human tumors
AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ...
Nature genetics 49 (7), 1005-1014, 2017
892017
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
NA McNeer, J Philip, H Geiger, RE Ries, VP Lavallee, M Walsh, M Shah, ...
Leukemia 33 (8), 1934-1943, 2019
882019
Segment-based multiple sequence alignment
T Rausch, AK Emde, D Weese, A Döring, C Notredame, K Reinert
Bioinformatics 24 (16), i187-i192, 2008
802008
NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium
D Taliun, DN Harris, MD Kessler, J Carlson, ZA Szpiech, R Torres, ...
Harris, DN, 290-299, 2021
782021
Detecting genomic indel variants with exact breakpoints in single-and paired-end sequencing data using SplazerS
AK Emde, MH Schulz, D Weese, R Sun, M Vingron, VM Kalscheuer, ...
Bioinformatics 28 (5), 619-627, 2012
772012
Disease variants in genomes of 44 centenarians
Y Freudenberg‐Hua, J Freudenberg, V Vacic, A Abhyankar, AK Emde, ...
Molecular genetics & genomic medicine 2 (5), 438-450, 2014
692014
Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone
K Trappe, AK Emde, HC Ehrlich, K Reinert
Bioinformatics 30 (24), 3484-3490, 2014
662014
A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads
T Rausch, S Koren, G Denisov, D Weese, AK Emde, A Döring, K Reinert
Bioinformatics 25 (9), 1118-1124, 2009
552009
Next-generation rapid autopsies enable tumor evolution tracking and generation of preclinical models
DJ Pisapia, S Salvatore, C Pauli, E Hissong, K Eng, D Prandi, VW Sailer, ...
JCO precision oncology 1, 1-13, 2017
522017
MicroRazerS: rapid alignment of small RNA reads
AK Emde, M Grunert, D Weese, K Reinert, SR Sperling
Bioinformatics 26 (1), 123-124, 2010
522010
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Artikelen 1–20