Romain Studer
Romain Studer
BenevolentAI
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CATH: comprehensive structural and functional annotations for genome sequences
I Sillitoe, TE Lewis, A Cuff, S Das, P Ashford, NL Dawson, N Furnham, ...
Nucleic acids research 43 (D1), D376-D381, 2015
3912015
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures
I Sillitoe, AL Cuff, BH Dessailly, NL Dawson, N Furnham, D Lee, JG Lees, ...
Nucleic Acids Research 41 (D1), D490-D498, 2013
2532013
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz
PLoS Computational Biology 8 (5), e1002514, 2012
1662012
How confident can we be that orthologs are similar, but paralogs differ?
RA Studer, M Robinson-Rechavi
Trends in Genetics 25 (5), 210-216, 2009
1562009
Epithelial Sodium Transport and its control by aldosterone: The Story of our Internal Environment revisited
BC Rossier, ME Baker, RA Studer
Physiological Reviews 95 (1), 297-340, 2015
1322015
Residue mutations and their impact on protein structure and function: detecting beneficial and pathogenic changes
RA Studer, BH Dessailly, CA Orengo
Biochemical Journal 449 (3), 581-594, 2013
1202013
Stability-activity tradeoffs constrain the adaptive evolution of RubisCO
RA Studer, PA Christin, MA Williams, CA Orengo
Proceedings of the National Academy of Sciences, 201310811, 2014
942014
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
RA Studer, S Penel, L Duret, M Robinson-Rechavi
Genome research 18 (9), 1393-1402, 2008
812008
Vitellogenin underwent subfunctionalization to acquire caste and behavioral specific expression in the harvester ant Pogonomyrmex barbatus
M Corona, R Libbrecht, Y Wurm, O Riba-Grognuz, RA Studer, L Keller
PLoS Genet 9 (8), e1003730, 2013
632013
Origin of the response to adrenal and sex steroids: Roles of promiscuity and co-evolution of enzymes and steroid receptors
ME Baker, DR Nelson, RA Studer
The Journal of steroid biochemistry and molecular biology 151, 12-24, 2015
622015
Adaptive divergence of ancient gene duplicates in the avian MHC class II β
R Burri, N Salamin, RA Studer, A Roulin, L Fumagalli
Molecular biology and evolution 27 (10), 2360-2374, 2010
612010
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis
JG Lees, D Lee, RA Studer, NL Dawson, I Sillitoe, S Das, C Yeats, ...
Nucleic acids research 42 (D1), D240-D245, 2014
482014
Selectome update: quality control and computational improvements to a database of positive selection
S Moretti, B Laurenczy, WH Gharib, B Castella, A Kuzniar, H Schabauer, ...
Nucleic acids research 42 (D1), D917-D921, 2014
472014
Evolution of protein phosphorylation across 18 fungal species
RA Studer, RA Rodriguez-Mias, KM Haas, JI Hsu, C Viéitez, C Solé, ...
Science 354 (6309), 229-232, 2016
442016
Selectome: a database of positive selection
E Proux, RA Studer, S Moretti, M Robinson-Rechavi
Nucleic acids research 37 (suppl 1), D404-D407, 2009
432009
Structural and evolutionary innovation of the heterodimerization interface between USP and the ecdysone receptor ECR in insects
T Iwema, A Chaumot, RA Studer, M Robinson-Rechavi, IML Billas, ...
Molecular biology and evolution 26 (4), 753-768, 2009
392009
Evolution of the epithelial sodium channel and the sodium pump as limiting factors of aldosterone action on sodium transport
RA Studer, E Person, M Robinson-Rechavi, BC Rossier
Physiological Genomics 43 (13), 844-854, 2011
372011
Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life
A Faddeeva, RA Studer, K Kraaijeveld, D Sie, B Ylstra, J Mariën, ...
PloS one 10 (6), e0130600, 2015
212015
Evidence for an episodic model of protein sequence evolution
RA Studer, M Robinson-Rechavi
Biochem. Soc. Trans 37, 783-786, 2009
202009
Large-scale analysis of orthologs and paralogs under covarion-like and constant-but-different models of amino acid evolution
RA Studer, M Robinson-Rechavi
Molecular biology and evolution 27 (11), 2618-2627, 2010
182010
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Artikelen 1–20