yibing shan
Title
Cited by
Cited by
Year
Atomic-level characterization of the structural dynamics of proteins
DE Shaw, P Maragakis, K Lindorff-Larsen, S Piana, RO Dror, ...
Science 330 (6002), 341-346, 2010
15572010
Scalable algorithms for molecular dynamics simulations on commodity clusters
KJ Bowers, DE Chow, H Xu, RO Dror, MP Eastwood, BA Gregersen, ...
SC'06: Proceedings of the 2006 ACM/IEEE Conference on Supercomputing, 43-43, 2006
11542006
Anton, a special-purpose machine for molecular dynamics simulation
DE Shaw, MM Deneroff, RO Dror, JS Kuskin, RH Larson, JK Salmon, ...
Communications of the ACM 51 (7), 91-97, 2008
6962008
Pathway and mechanism of drug binding to G-protein-coupled receptors
RO Dror, AC Pan, DH Arlow, DW Borhani, P Maragakis, Y Shan, H Xu, ...
Proceedings of the National Academy of Sciences 108 (32), 13118-13123, 2011
5632011
Millisecond-scale molecular dynamics simulations on Anton
DE Shaw, RO Dror, JK Salmon, JP Grossman, KM Mackenzie, JA Bank, ...
Proceedings of the conference on high performance computing networking …, 2009
4922009
How does a drug molecule find its target binding site?
Y Shan, ET Kim, MP Eastwood, RO Dror, MA Seeliger, DE Shaw
Journal of the American Chemical Society 133 (24), 9181-9183, 2011
4632011
Architecture and membrane interactions of the EGF receptor
A Arkhipov, Y Shan, R Das, NF Endres, MP Eastwood, DE Wemmer, ...
Cell 152 (3), 557-569, 2013
3742013
Conformational coupling across the plasma membrane in activation of the EGF receptor
NF Endres, R Das, AW Smith, A Arkhipov, E Kovacs, Y Huang, JG Pelton, ...
Cell 152 (3), 543-556, 2013
3652013
Prediction of protein interaction sites from sequence profile and residue neighbor list
HX Zhou, Y Shan
Proteins: Structure, Function, and Bioinformatics 44 (3), 336-343, 2001
3642001
Gaussian split Ewald: A fast Ewald mesh method for molecular simulation
Y Shan, JL Klepeis, MP Eastwood, RO Dror, DE Shaw
The Journal of chemical physics 122 (5), 054101, 2005
3142005
Anton, a special-purpose machine for molecular dynamics simulation
DE Shaw, MM Deneroff, RO Dror, JS Kuskin, RH Larson, JK Salmon, ...
ACM SIGARCH Computer Architecture News 35 (2), 1-12, 2007
3092007
Structural analysis of the catalytically inactive kinase domain of the human EGF receptor 3
N Jura, Y Shan, X Cao, DE Shaw, J Kuriyan
Proceedings of the National Academy of Sciences 106 (51), 21608-21613, 2009
2812009
Oncogenic mutations counteract intrinsic disorder in the EGFR kinase and promote receptor dimerization
Y Shan, MP Eastwood, X Zhang, ET Kim, A Arkhipov, RO Dror, J Jumper, ...
Cell 149 (4), 860-870, 2012
2572012
A conserved protonation-dependent switch controls drug binding in the Abl kinase
Y Shan, MA Seeliger, MP Eastwood, F Frank, H Xu, MŲ Jensen, RO Dror, ...
Proceedings of the National Academy of Sciences 106 (1), 139-144, 2009
2422009
Crystal structures of the JAK2 pseudokinase domain and the pathogenic mutant V617F
RM Bandaranayake, D Ungureanu, Y Shan, DE Shaw, O Silvennoinen, ...
Nature structural & molecular biology 19 (8), 754, 2012
1772012
Mechanism of Na+/H+ antiporting
IT Arkin, H Xu, MŲ Jensen, E Arbely, ER Bennett, KJ Bowers, E Chow, ...
Science 317 (5839), 799-803, 2007
1592007
Transitions to catalytically inactive conformations in EGFR kinase
Y Shan, A Arkhipov, ET Kim, AC Pan, DE Shaw
Proceedings of the National Academy of Sciences 110 (18), 7270-7275, 2013
1542013
Equally potent inhibition of c-Src and Abl by compounds that recognize inactive kinase conformations
MA Seeliger, P Ranjitkar, C Kasap, Y Shan, DE Shaw, NP Shah, ...
Cancer research 69 (6), 2384-2392, 2009
1372009
How IGF-1 activates its receptor
JM Kavran, JM McCabe, PO Byrne, MK Connacher, Z Wang, A Ramek, ...
Elife 3, e03772, 2014
1092014
Molecular basis for pseudokinase-dependent autoinhibition of JAK2 tyrosine kinase
Y Shan, K Gnanasambandan, D Ungureanu, ET Kim, H Hammarén, ...
Nature structural & molecular biology 21 (7), 579, 2014
1002014
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