Tomer Altman
Tomer Altman
Senior Bioinformaticist, Whole Biome Inc.; Researcher, Stanford University
Verified email at me.tomeraltman.net - Homepage
Title
Cited by
Cited by
Year
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
1637*2014
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ...
Nucleic acids research 36 (suppl_1), D623-D631, 2007
1377*2007
The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases
R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ...
Nucleic acids research 36 (suppl_1), D623-D631, 2007
12412007
EcoCyc: a comprehensive database of Escherichia coli biology
IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ...
Nucleic acids research 39 (suppl_1), D583-D590, 2010
5212010
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ...
Briefings in bioinformatics 11 (1), 40-79, 2010
5122010
A systematic comparison of the MetaCyc and KEGG pathway databases
T Altman, M Travers, A Kothari, R Caspi, PD Karp
BMC bioinformatics 14 (1), 112, 2013
1122013
Metabolic pathways for the whole community
NW Hanson, KM Konwar, AK Hawley, T Altman, PD Karp, SJ Hallam
BMC genomics 15 (1), 619, 2014
522014
56 BIBLIOGRAPHY Suzanne Paley, Pallavi Subhraveti, Daniel S. Weaver, Deepika Weerasinghe, Peifen Zhang, and Peter D. Karp. The MetaCyc database of metabolic pathways and …
R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ...
Nucleic acids research 42 (D1), D459-D471, 2014
46*2014
Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc
M Trupp, T Altman, CA Fulcher, R Caspi, M Krummenacker, S Paley, ...
Genome biology 11 (1), 1-1, 2010
262010
Finding sequences for over 270 orphan enzymes
AG Shearer, T Altman, CD Rhee
PLoS One 9 (5), e97250, 2014
162014
Data mining in the MetaCyc family of pathway databases
PD Karp, S Paley, T Altman
Data mining for systems biology, 183-200, 2013
162013
Methods and compositions for determining metabolic maps
C Cutcliffe, JS Eid, JH Bullard, T Altman, F Perraudeau
US Patent App. 15/945,705, 2018
52018
A geographically-diverse collection of 418 human gut microbiome pathway genome databases
AS Hahn, T Altman, KM Konwar, NW Hanson, D Kim, DA Relman, DL Dill, ...
Scientific data 4 (1), 1-12, 2017
42017
Petabase-scale sequence alignment catalyses viral discovery
RC Edgar, J Taylor, T Altman, P Barbera, D Meleshko, V Lin, D Lohr, ...
bioRxiv, 2020
32020
EcoCyc: a comprehensive database of Escherichia coli biology. Nucleic Acids Res39: D583–D590
IM Keseler, J Collado-Vides, A Santos-Zavaleta, M Peralta-Gil, ...
32011
BioCyc: Microbial Genomes and Cellular Networks-The BioCyc system helps scientists navigate the greatly expanding information space of genomes and metabolic information
PD Karp, IM Keseler, T Altman, R Caspi, CA Fulcher, P Subhraveti, ...
Microbe 6 (4), 176, 2011
22011
BioCyc: Microbial Genomes and Cellular Networks-The BioCyc system helps scientists navigate the greatly expanding information space of genomes and metabolic information
PD Karp, IM Keseler, T Altman, R Caspi, CA Fulcher, P Subhraveti, ...
Microbe 6 (4), 176, 2011
22011
GutCyc: a Multi-Study Collection of Human Gut Microbiome Metabolic Models
AS Hahn, T Altman, KM Konwar, NW Hanson, D Kim, DA Relman, DL Dill, ...
bioRxiv, 055574, 2016
12016
A Comparative Evaluation of Tools to Predict Metabolite Profiles From Microbiome Sequencing Data
X Yin, T Altman, E Rutherford, KA West, Y Wu, J Choi, PL Beck, ...
Frontiers in microbiology 11, 3132, 2020
2020
Methods and compositions for treatment of microbiome-associated disorders
C Cutcliffe, JS Eid, T Altman, OG Kolterman, JH Bullard
US Patent App. 16/804,285, 2020
2020
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