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Andrew Magee
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The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2
JE Pekar, A Magee, E Parker, N Moshiri, K Izhikevich, JL Havens, ...
Science 377 (6609), 960-966, 2022
1712022
The dawn of open access to phylogenetic data
AF Magee, MR May, BR Moore
PLoS One 9 (10), e110268, 2014
522014
19 dubious ways to compute the marginal likelihood of a phylogenetic tree topology
M Fourment, AF Magee, C Whidden, A Bilge, FA Matsen IV, VN Minin
Systematic biology 69 (2), 209-220, 2020
412020
Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts
AF Magee, S Höhna, TI Vasylyeva, AD Leaché, VN Minin
PLOS Computational Biology 16 (10), e1007999, 2020
312020
Horseshoe‐based Bayesian nonparametric estimation of effective population size trajectories
JR Faulkner, AF Magee, B Shapiro, VN Minin
Biometrics 76 (3), 677-690, 2020
202020
Rapidly changing speciation and extinction rates can be inferred in spite of nonidentifiability
BT Kopperud, AF Magee, S Höhna
Proceedings of the National Academy of Sciences 120 (7), e2208851120, 2023
152023
CRABS: Congruent rate analyses in birth–death scenarios
S Höhna, BT Kopperud, AF Magee
Methods in Ecology and Evolution 13 (12), 2709-2718, 2022
92022
Systematic Exploration of the High Likelihood Set of Phylogenetic Tree Topologies
C Whidden, BC Claywell, T Fisher, AF Magee, M Fourment, FA Matsen IV
Systematic biology 69 (2), 280-293, 2020
92020
Impact of K-Pg Mass Extinction Event on Crocodylomorpha Inferred from Phylogeny of Extinct and Extant Taxa
AF Magee, S Höhna
bioRxiv, 2021.01. 14.426715, 0
8
Data Integration in Bayesian Phylogenetics
GW Hassler, AF Magee, Z Zhang, G Baele, P Lemey, X Ji, M Fourment, ...
Annual Review of Statistics and Its Application 10, 353-377, 2023
72023
How trustworthy is your tree? Bayesian phylogenetic effective sample size through the lens of Monte Carlo error
A Magee, M Karcher, FA Matsen IV, VM Minin
Bayesian Analysis 1 (1), 1-29, 2023
52023
ACDC: Analysis of Congruent Diversification Classes
S Höhna, BT Kopperud, AF Magee
bioRxiv, 2022
32022
Robustness of phylogenetic inference to model misspecification caused by pairwise epistasis
AF Magee, SK Hilton, WS DeWitt
Molecular Biology and Evolution 38 (10), 4603-4615, 2021
32021
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2
JE Pekar, S Lytras, M Ghafari, AF Magee, E Parker, JL Havens, ...
bioRxiv, 2023.07. 12.548617, 2023
22023
On the surprising effectiveness of a simple matrix exponential derivative approximation, with application to global SARS-CoV-2
G Didier, NE Glatt-Holtz, AJ Holbrook, AF Magee, MA Suchard
arXiv preprint arXiv:2306.15841, 2023
12023
Random-effects substitution models for phylogenetics via scalable gradient approximations
AF Magee, AJ Holbrook, JE Pekar, IW Caviedes-Solis, FA Matsen IV, ...
arXiv preprint arXiv:2303.13642, 2023
12023
Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models
Y Shao, AF Magee, TI Vasylyeva, MA Suchard
bioRxiv, 2023.10. 31.564882, 2023
2023
Accelerated evolution of SARS-CoV-2 in free-ranging white-tailed deer (preprint)
D McBride, S Garushyants, J Franks, A Magee, S Overend, D Huey, ...
2023
The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2 (preprint)
JE Pekar, S Lytras, M Ghafari, AF Magee, E Parker, JL Havens, ...
2023
Reliable and interpretable inference of evolutionary history using Bayesian phylogenetic approaches
AF Magee
University of Washington, 2021
2021
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Artikelen 1–20