| A cross-platform toolkit for mass spectrometry and proteomics MC Chambers, B Maclean, R Burke, D Amodei, DL Ruderman, ... Nature biotechnology 30 (10), 918-920, 2012 | 3159 | 2012 |
| Panorama: a targeted proteomics knowledge base V Sharma, J Eckels, GK Taylor, NJ Shulman, AB Stergachis, SA Joyner, ... Journal of proteome research 13 (9), 4205-4210, 2014 | 218 | 2014 |
| Panorama public: a public repository for quantitative data sets processed in skyline V Sharma, J Eckels, B Schilling, C Ludwig, JD Jaffe, MJ MacCoss, ... Molecular & Cellular Proteomics 17 (6), 1239-1244, 2018 | 190 | 2018 |
| LabKey Server: an open source platform for scientific data integration, analysis and collaboration EK Nelson, B Piehler, J Eckels, A Rauch, M Bellew, P Hussey, S Ramsay, ... BMC bioinformatics 12, 1-23, 2011 | 153 | 2011 |
| An automated pipeline to monitor system performance in liquid chromatography–tandem mass spectrometry proteomic experiments MS Bereman, J Beri, V Sharma, C Nathe, J Eckels, B MacLean, ... Journal of proteome research 15 (12), 4763-4769, 2016 | 61 | 2016 |
| Methods utilizing a debugging proxy WA Pugh, JM Eckels, TL Lucas US Patent 7,530,053, 2009 | 32 | 2009 |
| Method for multi-language debugging WA Pugh, JM Eckels US Patent 7,299,454, 2007 | 29 | 2007 |
| Artificial intelligence for surveillance in public health R Thiébaut, S Cossin Yearbook of medical informatics 28 (01), 232-234, 2019 | 28 | 2019 |
| A tuberculosis ontology for host systems biology DM Levine, NK Dutta, J Eckels, C Scanga, C Stein, S Mehra, D Kaushal, ... Tuberculosis 95 (5), 570-574, 2015 | 17 | 2015 |
| Quality control, analysis and secure sharing of Luminex® immunoassay data using the open source LabKey Server platform J Eckels, C Nathe, EK Nelson, SG Shoemaker, EV Nostrand, NL Yates, ... BMC bioinformatics 14, 1-17, 2013 | 16 | 2013 |
| LabKey Server NAb: a tool for analyzing, visualizing and sharing results from neutralizing antibody assays B Piehler, EK Nelson, J Eckels, S Ramsay, K Lum, B Wood, KM Greene, ... BMC immunology 12, 1-10, 2011 | 15 | 2011 |
| Computer readable storage medium for multi-language debugging WA Pugh, JM Eckels US Patent 8,032,864, 2011 | 9 | 2011 |
| Systems utilizing a debugging proxy W Pugh, J Eckels, T Lucas US Patent App. 10/787,915, 2004 | 9 | 2004 |
| System for multi-language debugging W Pugh, J Eckels US Patent App. 10/784,559, 2004 | 9 | 2004 |
| Exchange of clinical and omics data according to FAIR principles: a review of open source solutions P Pugliese, C Knell, J Christoph Methods of Information in Medicine 59 (S 01), e13-e20, 2020 | 6 | 2020 |
| Audit logs to enforce document integrity in Skyline and Panorama T Rohde, R Chupalov, N Shulman, V Sharma, J Eckels, BS Pratt, ... Bioinformatics 36 (15), 4366-4368, 2020 | 4 | 2020 |
| Panorama: A Private Repository of Targeted Proteomics Assays for Skyline V Sharma, B MacLean, J Eckels, AB Stergachis, JD Jaffe Vancouver, CN, 2012 | 4 | 2012 |
| Installation and Use of LabKey Server for Proteomics J Eckels, P Hussey, EK Nelson, T Myers, A Rauch, M Bellew, B Connolly, ... Current Protocols in Bioinformatics 36 (1), 13.5. 1-13.5. 25, 2011 | 4 | 2011 |
| A framework for quality control in quantitative proteomics KA Tsantilas, GE Merrihew, JE Robbins, RS Johnson, J Park, DL Plubell, ... bioRxiv, 2024.04. 12.589318, 2024 | | 2024 |
| DEVELOPMENT OF PROCESS CONTROL TECHNIQUES FOR LC-& CE-MS FOR LARGE AND SMALL MOLECULES MS Bereman, J Beri, V Sharma, C Nathe, J Eckels, B MacLean, ... | | 2016 |
