| Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells L Pirola, A Balcerczyk, RW Tothill, I Haviv, A Kaspi, S Lunke, M Ziemann, ... Genome research 21 (10), 1601-1615, 2011 | 185 | 2011 |
| Deep sequencing reveals increased DNA methylation in chronic rat epilepsy K Kobow, A Kaspi, KN Harikrishnan, K Kiese, M Ziemann, I Khurana, ... Acta neuropathologica 126 (5), 741-756, 2013 | 140 | 2013 |
| Multicellular transcriptional analysis of mammalian heart regeneration GA Quaife-Ryan, CB Sim, M Ziemann, A Kaspi, H Rafehi, M Ramialison, ... Circulation 136 (12), 1123-1139, 2017 | 130 | 2017 |
| Molecular profiling of human mammary gland links breast cancer risk to a p27+ cell population with progenitor characteristics S Choudhury, V Almendro, VF Merino, Z Wu, R Maruyama, Y Su, ... Cell stem cell 13 (1), 117-130, 2013 | 94 | 2013 |
| Epigenetic regulation of cell type–specific expression patterns in the human mammary epithelium R Maruyama, S Choudhury, A Kowalczyk, M Bessarabova, ... PLoS Genet 7 (4), e1001369, 2011 | 92 | 2011 |
| Vascular histone deacetylation by pharmacological HDAC inhibition H Rafehi, A Balcerczyk, S Lunke, A Kaspi, M Ziemann, KN Harikrishnan, ... Genome research 24 (8), 1271-1284, 2014 | 68 | 2014 |
| Etiology matters–genomic DNA methylation patterns in three rat models of acquired epilepsy KJ Dębski, A Pitkanen, N Puhakka, AM Bot, I Khurana, KN Harikrishnan, ... Scientific reports 6 (1), 1-14, 2016 | 55 | 2016 |
| Dynamic changes in the cardiac methylome during postnatal development CB Sim, M Ziemann, A Kaspi, KN Harikrishnan, J Ooi, I Khurana, L Chang, ... The FASEB Journal 29 (4), 1329-1343, 2015 | 53 | 2015 |
| Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals S Perez, A Kaspi, T Domovitz, A Davidovich, A Lavi-Itzkovitz, T Meirson, ... PLoS genetics 15 (6), e1008181, 2019 | 39 | 2019 |
| Evaluation of microRNA alignment techniques M Ziemann, A Kaspi, A El-Osta Rna 22 (8), 1120-1138, 2016 | 37 | 2016 |
| Combining target enrichment with barcode multiplexing for high throughput SNP discovery N Cummings, R King, A Rickers, A Kaspi, S Lunke, I Haviv, JBM Jowett BMC genomics 11 (1), 1-8, 2010 | 27 | 2010 |
| Rapid development of non-alcoholic steatohepatitis in Psammomys obesus (Israeli sand rat) B Spolding, T Connor, C Wittmer, LLF Abreu, A Kaspi, M Ziemann, G Kaur, ... PloS One 9 (3), e92656, 2014 | 19 | 2014 |
| Lipoxins Regulate the Early Growth Response–1 Network and Reverse Diabetic Kidney Disease EP Brennan, M Mohan, A McClelland, C Tikellis, M Ziemann, A Kaspi, ... Journal of the American Society of Nephrology 29 (5), 1437-1448, 2018 | 18 | 2018 |
| Genomic DNA methylation distinguishes subtypes of human focal cortical dysplasia K Kobow, M Ziemann, H Kaipananickal, I Khurana, A Mühlebner, ... Epilepsia 60 (6), 1091-1103, 2019 | 14 | 2019 |
| Digital expression explorer 2: a repository of uniformly processed RNA sequencing data M Ziemann, A Kaspi, A El-Osta Gigascience 8 (4), giz022, 2019 | 12 | 2019 |
| Transcription factors Tp73, Cebpd, Pax6, and Spi1 rather than DNA methylation regulate chronic transcriptomics changes after experimental traumatic brain injury A Lipponen, A El-Osta, A Kaspi, M Ziemann, I Khurana, KN Harikrishnan, ... Acta neuropathologica communications 6 (1), 1-16, 2018 | 12 | 2018 |
| Systems approach to the pharmacological actions of HDAC inhibitors reveals EP300 activities and convergent mechanisms of regulation in diabetes H Rafehi, A Kaspi, M Ziemann, J Okabe, TC Karagiannis, A El-Osta Epigenetics 12 (11), 991-1003, 2017 | 11 | 2017 |
| Creating reusable tools from scripts: the Galaxy Tool Factory R Lazarus, A Kaspi, M Ziemann, Galaxy Team Bioinformatics 28 (23), 3139-3140, 2012 | 11 | 2012 |
| DNA methylation regulates hypothalamic gene expression linking parental diet during pregnancy to the offspring’s risk of obesity in Psammomys obesus I Khurana, A Kaspi, M Ziemann, T Block, T Connor, B Spolding, A Cooper, ... International Journal of Obesity 40 (7), 1079-1088, 2016 | 10 | 2016 |
| Diet during pregnancy is implicated in the regulation of hypothalamic RNA methylation and risk of obesity in offspring A Kaspi, I Khurana, M Ziemann, T Connor, B Spolding, P Zimmet, ... Molecular nutrition & food research 62 (14), 1800134, 2018 | 8 | 2018 |
