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George Githinji
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Genome Sequence of the Tsetse Fly (Glossina morsitans): Vector of African Trypanosomiasis
International Glossina Genome Initiative, GM Attardo, PP Abila, JE Auma, ...
Science 344 (6182), 380-386, 2014
2432014
Global disparities in SARS-CoV-2 genomic surveillance
AF Brito, E Semenova, G Dudas, GW Hassler, CC Kalinich, MUG Kraemer, ...
Nature communications 13 (1), 7003, 2022
1822022
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ...
Science 374 (6566), 423-431, 2021
1822021
Prognostic Indicators of Life-Threatening Malaria Are Associated with Distinct Parasite Variant Antigen Profiles
GM Warimwe, G Fegan, JN Musyoki, CRJC Newton, M Opiyo, G Githinji, ...
Science Translational Medicine 4 (129), 129ra45-129ra45, 2012
862012
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
H Tegally, JE San, M Cotten, M Moir, B Tegomoh, G Mboowa, DP Martin, ...
Science 378 (6615), eabq5358, 2022
822022
COVID-19 transmission dynamics underlying epidemic waves in Kenya
SPC Brand, J Ojal, R Aziza, V Were, EA Okiro, IK Kombe, C Mburu, ...
Science 374 (6570), 989-994, 2021
592021
Optimization of the SARS-CoV-2 ARTIC network V4 primers and whole genome sequencing protocol
AW Lambisia, KS Mohammed, TO Makori, L Ndwiga, MW Mburu, ...
Frontiers in Medicine 9, 836728, 2022
532022
Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
G Githinji, ZR de Laurent, KS Mohammed, DO Omuoyo, PM Macharia, ...
Nature communications 12 (1), 4809, 2021
432021
The utility of Escherichia coli as a contamination indicator for rural drinking water: Evidence from whole genome sequencing
S Nowicki, ZR Delaurent, EP de Villiers, G Githinji, KJ Charles
PLoS One 16 (1), e0245910, 2021
432021
Biogem: an effective tool based approach for scaling up open source software development in bioinformatics
RJP Bonnal, J Aerts, G Githinji, N Goto, D MacLean, CA Miller, H Mishima, ...
Bioinformatics, 2012
432012
Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
CN Agoti, PK Munywoki, MVT Phan, JR Otieno, E Kamau, A Bett, I Kombe, ...
Virus Evolution 3 (1), vex006, 2017
412017
Journal of Open Source Software (JOSS): design and first-year review
AM Smith, KE Niemeyer, DS Katz, LA Barba, G Githinji, M Gymrek, ...
PeerJ Computer Science 4, e147, 2018
362018
Scalable workflows and reproducible data analysis for genomics
F Strozzi, R Janssen, R Wurmus, MR Crusoe, G Githinji, P Di Tommaso, ...
Evolutionary Genomics: Statistical and Computational Methods, 723-745, 2019
322019
Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant
CN Agoti, MVT Phan, PK Munywoki, G Githinji, GF Medley, PA Cane, ...
Scientific reports 9 (1), 10076, 2019
282019
Toward a global virus genomic surveillance network
V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza, CVF Carrington, ...
Cell host & microbe 31 (6), 861-873, 2023
202023
Endemic chikungunya fever in Kenyan children: a prospective cohort study
DK Nyamwaya, M Otiende, DO Omuoyo, G Githinji, HK Karanja, ...
BMC Infectious Diseases 21, 1-10, 2021
182021
Evaluating the performance of tools used to call minority variants from whole genome short-read data
KS Mohammed, N Kibinge, P Prins, CN Agoti, M Cotten, DJ Nokes, ...
Wellcome open research 3, 2018
172018
Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study
CN Agoti, LI Ochola-Oyier, S Dellicour, KS Mohammed, AW Lambisia, ...
Elife 11, e71703, 2022
13*2022
The Plasmodium falciparum Rh5 invasion protein complex reveals an excess of rare variant mutations
L Ndwiga, V Osoti, KO Ochwedo, K Wamae, P Bejon, JC Rayner, ...
Malaria Journal 20 (1), 278, 2021
122021
A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections
G Githinji, PC Bull
Wellcome Open Research 2, 2017
112017
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Artikelen 1–20