SWISS-MODEL: homology modelling of protein structures and complexes A Waterhouse, M Bertoni, S Bienert, G Studer, G Tauriello, R Gumienny, ... Nucleic acids research 46 (W1), W296-W303, 2018 | 2796 | 2018 |
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 260 | 2016 |
Artemether resistance in vitro is linked to mutations in PfATP6 that also interact with mutations in PfMDR1 in travellers returning with Plasmodium falciparum infections DR Pillai, R Lau, K Khairnar, R Lepore, A Via, HM Staines, S Krishna Malaria journal 11 (1), 1-9, 2012 | 39 | 2012 |
PIGSPro: prediction of immunoGlobulin structures v2 R Lepore, PP Olimpieri, MA Messih, A Tramontano Nucleic acids research 45 (W1), W17-W23, 2017 | 32 | 2017 |
Multistep current signal in protein translocation through graphene nanopores EL Bonome, R Lepore, D Raimondo, F Cecconi, A Tramontano, ... The Journal of Physical Chemistry B 119 (18), 5815-5823, 2015 | 32 | 2015 |
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies MA Messih, R Lepore, P Marcatili, A Tramontano Bioinformatics 30 (19), 2733-2740, 2014 | 30 | 2014 |
LoopIng: a template-based tool for predicting the structure of protein loops MA Messih, R Lepore, A Tramontano Bioinformatics 31 (23), 3767-3772, 2015 | 26 | 2015 |
Investigation of a potential mechanism for the inhibition of SmTGR by Auranofin and its implications for Plasmodium falciparum inhibition A Caroli, S Simeoni, R Lepore, A Tramontano, A Via Biochemical and biophysical research communications 417 (1), 576-581, 2012 | 22 | 2012 |
PepComposer: computational design of peptides binding to a given protein surface A Obarska-Kosinska, A Iacoangeli, R Lepore, A Tramontano Nucleic acids research 44 (W1), W522-W528, 2016 | 20 | 2016 |
Insights on protein thermal stability: a graph representation of molecular interactions M Miotto, PP Olimpieri, L Di Rienzo, F Ambrosetti, P Corsi, R Lepore, ... Bioinformatics 35 (15), 2569-2577, 2019 | 16 | 2019 |
Superposition-free comparison and clustering of antibody binding sites: implications for the prediction of the nature of their antigen L Di Rienzo, E Milanetti, R Lepore, PP Olimpieri, A Tramontano Scientific reports 7 (1), 1-10, 2017 | 15 | 2017 |
Identification of the Schistosoma mansoni molecular target for the antimalarial drug artemether R Lepore, S Simeoni, D Raimondo, A Caroli, A Tramontano, A Via Journal of chemical information and modeling 51 (11), 3005-3016, 2011 | 14 | 2011 |
Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling R Lorrai, F Gandolfi, A Boccaccini, V Ruta, M Possenti, A Tramontano, ... Scientific reports 8 (1), 1-13, 2018 | 8 | 2018 |
Modeling of protein tertiary and quaternary structures based on evolutionary information G Studer, G Tauriello, S Bienert, AM Waterhouse, M Bertoni, L Bordoli, ... Computational Methods in Protein Evolution, 301-316, 2019 | 5 | 2019 |
Target highlights in CASP13: Experimental target structures through the eyes of their authors R Lepore, A Kryshtafovych, M Alahuhta, HA Veraszto, YJ Bomble, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1037-1057, 2019 | 4 | 2019 |
About the need to make computational models of biological macromolecules available and discoverable LA Abriata, R Lepore, M Dal Peraro Bioinformatics 36 (9), 2952-2954, 2020 | 3 | 2020 |
TiPs: a database of therapeutic targets in pathogens and associated tools R Lepore, A Tramontano, A Via Bioinformatics 29 (14), 1821-1822, 2013 | 3 | 2013 |
Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group L De Mattos-Arruda, M Vazquez, F Finotello, R Lepore, E Porta, J Hundal, ... Annals of oncology, 2020 | 1 | 2020 |
Unraveling the molecular basis of host cell receptor usage in SARS-CoV-2 and other human pathogenic β-CoVs C Pontes, V Ruiz-Serra, R Lepore, A Valencia Computational and Structural Biotechnology Journal, 2020 | | 2020 |
Immunologically discernible cell surface variants for use in cell therapy L Jeker, M Kornette, LB SCHWEDE, T Schwede, R Lepore, RM MARONE, ... US Patent App. 16/346,185, 2019 | | 2019 |