| Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ... Bioinformatics and biology insights 9, BBI. S12462, 2015 | 350 | 2015 |
| Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, ... Gigascience 4 (1), s13742-015-0077-2, 2015 | 94 | 2015 |
| Protein–protein interaction predictions using text mining methods N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos Methods 74, 47-53, 2015 | 88 | 2015 |
| ProteoSign: an end-user online differential proteomics statistical analysis platform G Efstathiou, AN Antonakis, GA Pavlopoulos, T Theodosiou, P Divanach, ... Nucleic acids research 45 (W1), W300-W306, 2017 | 38 | 2017 |
| DrugQuest-a text mining workflow for drug association discovery N Papanikolaou, GA Pavlopoulos, T Theodosiou, IS Vizirianakis, ... BMC bioinformatics 17 (5), 333-341, 2016 | 29 | 2016 |
| NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks T Theodosiou, G Efstathiou, N Papanikolaou, NC Kyrpides, PG Bagos, ... BMC research notes 10 (1), 1-9, 2017 | 28 | 2017 |
| Gene socialization: gene order, GC content and gene silencing in Salmonella N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos BMC genomics 10 (1), 1-10, 2009 | 28 | 2009 |
| BioTextQuest + : a knowledge integration platform for literature mining and concept discovery N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ... Bioinformatics 30 (22), 3249-3256, 2014 | 25 | 2014 |
| Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae M Tsochatzidou, M Malliarou, N Papanikolaou, J Roca, C Nikolaou Nucleic acids research 45 (10), 5818-5828, 2017 | 21 | 2017 |
| BioTextQuest: a web-based biomedical text mining suite for concept discovery N Papanikolaou, E Pafilis, S Nikolaou, CA Ouzounis, I Iliopoulos, ... Bioinformatics 27 (23), 3327-3328, 2011 | 18 | 2011 |
| Evidence for APOBEC3B mRNA and protein expression in oral squamous cell carcinomas G Fanourakis, K Tosios, N Papanikolaou, I Chatzistamou, M Xydous, ... Experimental and molecular pathology 101 (3), 314-319, 2016 | 14 | 2016 |
| The gene toolkit implicated in functional sex in Sparidae hermaphrodites: Inferences from comparative transcriptomics A Tsakogiannis, T Manousaki, J Lagnel, N Papanikolaou, ... Frontiers in Genetics 9, 749, 2019 | 12 | 2019 |
| The Chlamydiales pangenome revisited: structural stability and functional coherence FE Psomopoulos, VI Siarkou, N Papanikolaou, I Iliopoulos, AS Tsaftaris, ... Genes 3 (2), 291-319, 2012 | 12 | 2012 |
| Immune response (IgG) following full inoculation with BNT162b2 COVID‑19 mRNA among healthcare professionals A Tsatsakis, E Vakonaki, M Tzatzarakis, M Flamourakis, TK Nikolouzakis, ... International Journal of Molecular Medicine 48 (5), 1-10, 2021 | 8 | 2021 |
| UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network T Theodosiou, N Papanikolaou, M Savvaki, G Bonetto, S Maxouri, ... NAR genomics and bioinformatics 2 (1), lqaa005, 2020 | 4 | 2020 |
| OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction E Pafilis, GA Pavlopoulos, VP Satagopam, N Papanikolaou, H Horn, ... 13th IEEE International Conference on BioInformatics and BioEngineering, 1-4, 2013 | 2 | 2013 |
| Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks SM Papoudas, N Papanikolaou, C Nikolaou Computational and structural biotechnology journal 18, 220-229, 2020 | 1 | 2020 |
| Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks S Mavropoulos Papoudas, N Papanikolaou, C Nikolaou | | 2020 |
| Genome urbanization: Clusters of topologically co-regulated genes delineate functional compartments in the genome of S. cerevisiae M Tsochatzidou, M Malliarou, N Papanikolaou, J Roca, C Nikolaou bioRxiv, 064667, 2017 | | 2017 |
| Erratum: BioTextQuest+: a knowledge integration platform for literature mining and concept discovery (Bioinformatics (2014) 30: 22 (3249-3256 N Papanikolaou, GA Pavlopoulos, E Pafilis, TG Theodosiou, R Schneider, ... | | 2015 |
