Gregory Kucherov

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Laurent Noéassociate professor (computer science) enseignant-chercheur (informatique), Lille (France)Verified email at univ-lille.fr
Philippe JacquesUniversite de liegeVerified email at uliege.be
Karel BřindaINRIA/IRISA RennesVerified email at inria.fr
Mikhail RoytbergHead of Applied Math Lab, Institute of Mathematical Problems in Biology RAS, Pushchino, Russia Verified email at lpm.org.ru
Michael RusinowitchINRIAVerified email at loria.fr
Maude PupinMaître de conférences en informatique, Université de LilleVerified email at univ-lille.fr
Tatiana StarikovskayaEcole Normale SupérieureVerified email at ens.fr
Ania GambinInstitute of Informatics University of WarsawVerified email at mimuw.edu.pl
Maxime CrochemoreKCLVerified email at kcl.ac.uk
Slawomir LasotaUniversity of Warsaw, prof. of computer scienceVerified email at mimuw.edu.pl
Thierry LecroqLITIS EA 4108, University of Rouen Normandy, FranceVerified email at univ-rouen.fr
Michael BaymHarvard Medical SchoolVerified email at hms.harvard.edu
Maciek SykulskiMedical University of WarsawVerified email at mimuw.edu.pl
Yakov NekrichAssociate Professor, Michigan Technological UniveristyVerified email at uwaterloo.ca
Mathieu GiraudSenior Researcher, CNRS, CRIStAL, Université Lille, InriaVerified email at univ-lille.fr
Justin O'GradyQuadram Institute Bioscience and University of East AngliaVerified email at uea.ac.uk
William HanageHarvard T H Chan School of Public HealthVerified email at hsph.harvard.edu
Lauren A CowleyUniversity of BathVerified email at bath.ac.uk
Alanna CallendrelloResearch Assistant II, Harvard UniversityVerified email at hsph.harvard.edu
Themoula CharalampousVerified email at kcl.ac.uk

Gregory Kucherov

Directeur de recherche CNRS, LIGM, Univ Gaspard Monge, France

Verified email at univ-mlv.fr - Homepage

Algorithms Computational Biology


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mreps: efficient and flexible detection of tandem repeats in DNA R Kolpakov, G Bana, G Kucherov Nucleic acids research 31 (13), 3672-3678, 2003	458	2003
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006	397*	2006
Finding maximal repetitions in a word in linear time R Kolpakov, G Kucherov 40th Annual Symposium on Foundations of Computer Science (Cat. No. 99CB37039 …, 1999	387	1999
YASS: enhancing the sensitivity of DNA similarity search L Noé, G Kucherov Nucleic acids research 33 (suppl_2), W540-W543, 2005	359	2005
NORINE: a database of nonribosomal peptides S Caboche, M Pupin, V Leclere, A Fontaine, P Jacques, G Kucherov Nucleic acids research 36 (suppl_1), D326-D331, 2007	349	2007
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity S Caboche, V Leclère, M Pupin, G Kucherov, P Jacques Journal of bacteriology 192 (19), 5143-5150, 2010	146	2010
A unifying framework for seed sensitivity and its application to subset seeds G Kucherov, L Noé, M Roytberg Journal of bioinformatics and computational biology 4 (02), 553-569, 2006	113	2006
On maximal repetitions in words R Kolpakov, G Kucherov Journal of Discrete Algorithms 1 (1), 159-186, 2000	108	2000
Improved hit criteria for DNA local alignment L Noé, G Kucherov BMC bioinformatics 5, 1-9, 2004	96	2004
Spaced seeds improve k-mer-based metagenomic classification K Břinda, M Sykulski, G Kucherov Bioinformatics 31 (22), 3584-3592, 2015	90	2015
Optimal reconstruction of graphs under the additive model V Grebinski, G Kucherov Algorithmica 28, 104-124, 2000	90	2000
Reconstructing a Hamiltonian cycle by querying the graph: Application to DNA physical mapping V Grebinski, G Kucherov Discrete Applied Mathematics 88 (1-3), 147-165, 1998	89	1998
Multiseed lossless filtration G Kucherov, L Noé, M Roytberg IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (1), 51-61, 2005	82	2005
Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov Algorithms for Molecular Biology 9 (1), 1-10, 2014	80	2014
Combinatorial search on graphs motivated by bioinformatics applications: A brief survey M Bouvel, V Grebinski, G Kucherov Graph-Theoretic Concepts in Computer Science: 31st International Workshop …, 2005	72	2005
Finding approximate repetitions under Hamming distance R Kolpakov, G Kucherov Theoretical Computer Science 303 (1), 135-156, 2003	67	2003
Searching for gapped palindromes R Kolpakov, G Kucherov Theoretical Computer Science 410 (51), 5365-5373, 2009	62	2009
Matching a set of strings with variable length don't cares G Kucherov, M Rusinowitch Theoretical Computer Science 178 (1-2), 129-154, 1997	62	1997
Using cascading bloom filters to improve the memory usage for de brujin graphs K Salikhov, G Sacomoto, G Kucherov Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013	58	2013
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, ... Nature microbiology 5 (3), 455-464, 2020	57	2020

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