Gregory Kucherov

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Laurent Noéassociate professor (computer science) enseignant-chercheur (informatique), Lille (France)Verified email at univ-lille.fr
Karel BřindaInria Starting Faculty, Inria/IRISA RennesVerified email at inria.fr
Philippe JacquesUniversite de liegeVerified email at uliege.be
Mikhail RoytbergHead of Applied Math Lab, Institute of Mathematical Problems in Biology RAS, Pushchino, Russia Verified email at lpm.org.ru
Michael RusinowitchINRIAVerified email at loria.fr
Maxime CrochemoreKCLVerified email at kcl.ac.uk
Maude PupinMaître de conférences en informatique, Université de LilleVerified email at univ-lille.fr
Ania GambinInstitute of Informatics University of WarsawVerified email at mimuw.edu.pl
Tatiana StarikovskayaEcole Normale SupérieureVerified email at ens.fr
Michael BaymHarvard Medical SchoolVerified email at hms.harvard.edu
Slawomir LasotaUniversity of Warsaw, prof. of computer scienceVerified email at mimuw.edu.pl
Thierry LecroqLITIS UR 4108, University of Rouen Normandy, FranceVerified email at univ-rouen.fr
Maciek SykulskiMedical University of WarsawVerified email at mimuw.edu.pl
Yakov NekrichAssociate Professor, Michigan Technological UniveristyVerified email at uwaterloo.ca
Mathieu GiraudSenior Researcher, CNRS, CRIStAL, Université Lille, InriaVerified email at univ-lille.fr
Justin O'GradyOxford Nanopore Technologies and University of East AngliaVerified email at uea.ac.uk
William HanageHarvard T H Chan School of Public HealthVerified email at hsph.harvard.edu
Lauren A CowleyUniversity of BathVerified email at bath.ac.uk
Alanna CallendrelloResearch Assistant II, Harvard UniversityVerified email at hsph.harvard.edu
Themoula CharalampousVerified email at kcl.ac.uk

Gregory Kucherov

Directeur de recherche CNRS, LIGM, Univ Gaspard Monge, France

Verified email at univ-mlv.fr - Homepage

Algorithms Computational Biology


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mreps: efficient and flexible detection of tandem repeats in DNA R Kolpakov, G Bana, G Kucherov Nucleic acids research 31 (13), 3672-3678, 2003	470	2003
Finding maximal repetitions in a word in linear time R Kolpakov, G Kucherov 40th Annual Symposium on Foundations of Computer Science (Cat. No. 99CB37039 …, 1999	397	1999
YASS: enhancing the sensitivity of DNA similarity search L Noé, G Kucherov Nucleic acids research 33 (suppl_2), W540-W543, 2005	380	2005
NORINE: a database of nonribosomal peptides S Caboche, M Pupin, V Leclere, A Fontaine, P Jacques, G Kucherov Nucleic acids research 36 (suppl_1), D326-D331, 2007	356	2007
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006	189*	2006
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity S Caboche, V Leclère, M Pupin, G Kucherov, P Jacques Journal of bacteriology 192 (19), 5143-5150, 2010	152	2010
A unifying framework for seed sensitivity and its application to subset seeds G Kucherov, L Noé, M Roytberg Journal of bioinformatics and computational biology 4 (02), 553-569, 2006	117	2006
On maximal repetitions in words R Kolpakov, G Kucherov Journal of Discrete Algorithms 1 (1), 159-186, 2000	108	2000
Spaced seeds improve k-mer-based metagenomic classification K Břinda, M Sykulski, G Kucherov Bioinformatics 31 (22), 3584-3592, 2015	100	2015
Optimal reconstruction of graphs under the additive model V Grebinski, G Kucherov Algorithmica 28, 104-124, 2000	99	2000
Improved hit criteria for DNA local alignment L Noé, G Kucherov BMC bioinformatics 5, 1-9, 2004	98	2004
Reconstructing a Hamiltonian cycle by querying the graph: Application to DNA physical mapping V Grebinski, G Kucherov Discrete Applied Mathematics 88 (1-3), 147-165, 1998	93	1998
Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov Algorithms for Molecular Biology 9 (1), 1-10, 2014	85	2014
Multiseed lossless filtration G Kucherov, L Noé, M Roytberg IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (1), 51-61, 2005	85	2005
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, ... Nature microbiology 5 (3), 455-464, 2020	78	2020
Combinatorial search on graphs motivated by bioinformatics applications: A brief survey M Bouvel, V Grebinski, G Kucherov Graph-Theoretic Concepts in Computer Science: 31st International Workshop …, 2005	76	2005
Finding approximate repetitions under Hamming distance R Kolpakov, G Kucherov Theoretical Computer Science 303 (1), 135-156, 2003	69	2003
Searching for gapped palindromes R Kolpakov, G Kucherov Theoretical Computer Science 410 (51), 5365-5373, 2009	66	2009
Matching a set of strings with variable length don't cares G Kucherov, M Rusinowitch Theoretical Computer Science 178 (1-2), 129-154, 1997	61	1997
Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov International Workshop on Algorithms in Bioinformatics, 364-376, 2013	60	2013

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