| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016 | 412 | 2016 |
| The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019 | 351 | 2019 |
| UTurku: drug named entity recognition and drug-drug interaction extraction using SVM classification and domain knowledge J Björne, S Kaewphan, T Salakoski Second Joint Conference on Lexical and Computational Semantics (* SEM …, 2013 | 120 | 2013 |
| Lysophosphatidic acid and sphingosine-1-phosphate promote morphogenesis and block invasion of prostate cancer cells in three-dimensional organotypic models V Härmä, M Knuuttila, J Virtanen, T Mirtti, P Kohonen, P Kovanen, ... Oncogene 31 (16), 2075-2089, 2012 | 51 | 2012 |
| Syntactic analyses and named entity recognition for PubMed and PubMed Central—up-to-the-minute K Hakala, S Kaewphan, T Salakoski, F Ginter Proceedings of the 15th Workshop on Biomedical Natural Language Processing …, 2016 | 34 | 2016 |
| Cell line name recognition in support of the identification of synthetic lethality in cancer from text S Kaewphan, S Van Landeghem, T Ohta, Y Van de Peer, F Ginter, ... Bioinformatics 32 (2), 276-282, 2016 | 29 | 2016 |
| Neural network and random forest models in protein function prediction K Hakala, S Kaewphan, J Björne, F Mehryary, H Moen, M Tolvanen, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (3 …, 2020 | 26 | 2020 |
| UTU: Disease mention recognition and normalization with CRFs and vector space representations S Kaewphan, K Hakala, F Ginter Proceedings of the 8th international workshop on semantic evaluation …, 2014 | 19 | 2014 |
| Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling S Kaewphan, K Hakala, N Miekka, T Salakoski, F Ginter Database 2018, bay096, 2018 | 14 | 2018 |
| End-to-end system for bacteria habitat extraction F Mehryary, K Hakala, S Kaewphan, J Björne, T Salakoski, F Ginter BioNLP 2017, 80-90, 2017 | 14 | 2017 |
| Integrating large-scale text mining and co-expression networks: Targeting NADP (H) metabolism in E. coli with event extraction S Kaewphan, S Kreula, S Van Landeghem, Y Van de Peer, P Jones, ... Proceedings of the Third Workshop on Building and Evaluating Resources for …, 2012 | 11 | 2012 |
| TurkuNLP entry for interactive Bio-ID assignment S Kaewphan, F Mehryary, K Hakala, T Salakoski, F Ginter Proceedings of the BioCreative VI Workshop, 32-35, 2017 | 6 | 2017 |
| Evaluating large-scale text mining applications beyond the traditional numeric performance measures S Van Landeghem, S Kaewphan, F Ginter, Y Van de Peer Proceedings of the 2013 Workshop on Biomedical Natural Language Processing …, 2013 | 4 | 2013 |
| Cyevex: literature-scale network integration and visualization through cytoscape K Hakala, S Van Landeghem, S Kaewphan, T Salakoski, Y Van de Peer, ... Proc. SMBM 12, 91-96, 2012 | 4 | 2012 |
| Finding novel relationships with integrated gene-gene association network analysis of Synechocystis sp. PCC 6803 using species-independent text-mining SM Kreula, S Kaewphan, F Ginter, PR Jones PeerJ 6, e4806, 2018 | 3 | 2018 |
| Filtering large-scale event collections using a combination of supervised and unsupervised learning for event trigger classification F Mehryary, S Kaewphan, K Hakala, F Ginter Journal of Biomedical Semantics 7, 1-13, 2016 | 2 | 2016 |
| Hypothesis generation in large-scale event networks K Hakala, F Mehryary, S Kaewphan, F Ginter, F Rinaldi, K Jin-Dong Proceedings of the 5th International Symposium on Languages in Biology and …, 2013 | 2 | 2013 |
| Eliminating Incorrect Events from Large-Scale Event Networks by Trigger Word Clustering and Pruning F Mehryary, S Kaewphan, K Hakala, F Ginter The University of Turku Graduate School (UTUGS), University of Turku, Finland, 2013 | 1 | 2013 |
| Availability: This version is available at: http://porto. polito. it/2649752/since: September 2016 Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... | | |
| Third Workshop on Building and Evaluating Resources for Biomedical Text Mining Workshop Programme J Tsujii, C Mihăilă, RT Batista-Navarro, S Ananiadou, S Kaewphan, ... | | |
Filip GinterUniversity of TurkuGeverifieerd e-mailadres voor utu.fi
