| A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex MMC Lam, RR Wick, SC Watts, LT Cerdeira, KL Wyres, KE Holt Nature communications 12 (1), 4188, 2021 | 432 | 2021 |
| FastSpar: rapid and scalable correlation estimation for compositional data SC Watts, SC Ritchie, M Inouye, KE Holt Bioinformatics 35 (6), 1064-1066, 2019 | 198 | 2019 |
| Airway microbiota dynamics uncover a critical window for interplay of pathogenic bacteria and allergy in childhood respiratory disease SM Teo, HHF Tang, D Mok, LM Judd, SC Watts, K Pham, BJ Holt, M Kusel, ... Cell host & microbe 24 (3), 341-352. e5, 2018 | 165 | 2018 |
| A scalable permutation approach reveals replication and preservation patterns of network modules in large datasets SC Ritchie, S Watts, LG Fearnley, KE Holt, G Abraham, M Inouye Cell systems 3 (1), 71-82, 2016 | 61 | 2016 |
| hicap: In Silico Serotyping of the Haemophilus influenzae Capsule Locus SC Watts, KE Holt Journal of clinical microbiology 57 (6), e00190-19, 2019 | 40 | 2019 |
| Correcting index databases improves metagenomic studies G Méric, RR Wick, SC Watts, KE Holt, M Inouye BioRxiv, 712166, 2019 | 32 | 2019 |
| Perturbation of the two-component signal transduction system, BprRS, results in attenuated virulence and motility defects in Burkholderia pseudomallei NRL Adler, EM Allwood, DD Lucas, P Harrison, S Watts, A Dimitropoulos, ... BMC genomics 17 (1), 1-17, 2016 | 23 | 2016 |
| Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry S Bridel, SC Watts, LM Judd, T Harshegyi, V Passet, C Rodrigues, KE Holt, ... Research in microbiology 172 (4-5), 103835, 2021 | 13 | 2021 |
| Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis SC Watts, LM Judd, R Carzino, S Ranganathan, KE Holt Msystems 6 (4), e00178-21, 2021 | 8 | 2021 |
| Dynamics of airway microbiota identify a critical window for interplay of pathogenic bacteria and allergic sensitization in childhood respiratory disease SM Teo, HHF Tang, D Mok, LM Judd, SC Watts, K Pham, BJ Holt, M Kusel, ... Cell host & microbe 24 (3), 341, 2018 | 7 | 2018 |
