Mikael Trellet
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The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
7522016
Posttranslational modification of pili upon cell contact triggers N. meningitidis dissemination
J Chamot-Rooke, G Mikaty, C Malosse, M Soyer, A Dumont, J Gault, ...
Science 331 (6018), 778, 2011
1802011
A unified conformational selection and induced fit approach to protein-peptide docking
M Trellet, ASJ Melquiond, AMJJ Bonvin
PloS one 8 (3), e58769, 2013
1382013
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions
R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ...
Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013
922013
Clustering biomolecular complexes by residue contacts similarity
JP Rodrigues, M Trellet, C Schmitz, P Kastritis, E Karaca, ASJ Melquiond, ...
Proteins: Structure, Function, and Bioinformatics 80 (7), 1810-1817, 2012
692012
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
512013
SpotOn: high accuracy identification of protein-protein interface hot-spots
IS Moreira, PI Koukos, R Melo, JG Almeida, AJ Preto, J Schaarschmidt, ...
Scientific reports 7 (1), 1-11, 2017
352017
Performance of HADDOCK and a simple contact-based protein–ligand binding affinity predictor in the D3R Grand Challenge 2
Z Kurkcuoglu, PI Koukos, N Citro, ME Trellet, J Rodrigues, IS Moreira, ...
Journal of computer-aided molecular design 32 (1), 175-185, 2018
272018
The DisVis and PowerFit web servers: explorative and integrative modeling of biomolecular complexes
GCP van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ...
Journal of molecular biology 429 (3), 399-407, 2017
252017
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
232019
Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server
A Vangone, J Schaarschmidt, P Koukos, C Geng, N Citro, ME Trellet, ...
Bioinformatics 35 (9), 1585-1587, 2019
192019
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
19*2017
Information-driven modeling of protein-peptide complexes
M Trellet, ASJ Melquiond, AMJJ Bonvin
Computational Peptidology, 221-239, 2015
172015
Computational peptidology
P Zhou, J Huang
Humana Press, 2015
142015
ExaViz: a flexible framework to analyse, steer and interact with molecular dynamics simulations
M Dreher, J Prevoteau-Jonquet, M Trellet, M Piuzzi, M Baaden, B Raffin, ...
Faraday discussions 169, 119-142, 2014
132014
Semantics for an integrative and immersive pipeline combining visualization and analysis of molecular data
M Trellet, N Férey, J Flotyński, M Baaden, P Bourdot
Journal of integrative bioinformatics 15 (2), 2018
112018
Interactive visual analytics of molecular data in immersive environments via a semantic definition of the content and the context
M Trellet, N Ferey, M Baaden, P Bourdot
2016 Workshop on Immersive Analytics (IA), 48-53, 2016
92016
Sharing data from molecular simulations
M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ...
Journal of chemical information and modeling 59 (10), 4093-4099, 2019
72019
pdb-tools: a swiss army knife for molecular structures
JP Rodrigues, JMC Teixeira, M Trellet, AMJJ Bonvin
F1000Research 7, 2018
52018
Folding Then Binding vs Folding Through Binding in Macrocyclic Peptide Inhibitors of Human Pancreatic α-Amylase
L Goldbach, BJA Vermeulen, S Caner, M Liu, C Tysoe, L van Gijzel, ...
ACS chemical biology 14 (8), 1751-1759, 2019
42019
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Artikelen 1–20