Leena Salmela

Cited by

	All	Since 2019
Citations	2334	1221
h-index	19	14
i10-index	27	18

280

140

210

20072008200920102011201220132014201520162017201820192020202120222023202414 5 20 30 43 82 83 110 140 174 195 170 196 191 261 214 215 143

Public access

View all

34 articles

0 articles

available

not available

Based on funding mandates

Co-authors

Jorma TarhioProfessor Emeritus, Aalto UniversityVerified email at aalto.fi
Veli MäkinenProfessor of Computer Science, University of HelsinkiVerified email at helsinki.fi
Eric RivalsLIRMM, Centre National Recherche Scientifique (CNRS) & Univ. Montpellier, FranceVerified email at lirmm.fr
Riku WalveUniversity of HelsinkiVerified email at cs.helsinki.fi
Simon J. PuglisiProfessor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Christina BoucherUniversity of FloridaVerified email at ufl.edu
Alexandru I. TomescuDepartment of Computer Science, University of HelsinkiVerified email at helsinki.fi
Niko VälimäkiPostdoctoral researcher, University of HelsinkiVerified email at cs.helsinki.fi
Kingshuk MukherjeeComputer and Information Science and Engineering, University of FloridaVerified email at ufl.edu
Travis GagieAssociate Professor at Dalhousie UniversityVerified email at dal.ca
Gonzalo NavarroUniversity of ChileVerified email at dcc.uchile.cl
Jan SchröderPostdoc researcher, Monash UniversityVerified email at monash.edu
Pasi RastasStaff Scientist, University of Helsinki, Institute of BiotechnologyVerified email at helsinki.fi
Martin D MuggliAlumniVerified email at alumni.colostate.edu
Diego DíazPostdoctoral researcherVerified email at helsinki.fi
Bahar AlipanahiDelfi DiagnosticsVerified email at delfidiagnostics.com
Francisco ClaudeLinkedInVerified email at recoded.cl
Kristoffer SahlinAssistant Professor at Department of Mathematics, Stockholm UniversityVerified email at math.su.se
Borja Freire CastroUniversity of A CoruñaVerified email at udc.es
Susana LadraUniversity of A Coruña, Centro de investigación CITICVerified email at udc.es

Leena Salmela

University of Helsinki

Verified email at cs.helsinki.fi - Homepage

Bioinformatics String algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
LoRDEC: accurate and efficient long read error correction L Salmela, E Rivals Bioinformatics 30 (24), 3506-3514, 2014	742	2014
The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera V Ahola, R Lehtonen, P Somervuo, L Salmela, P Koskinen, P Rastas, ... Nature communications 5 (1), 4737, 2014	243	2014
Correcting errors in short reads by multiple alignments L Salmela, J Schröder bioinformatics 27 (11), 1455-1461, 2011	217	2011
Correction of sequencing errors in a mixed set of reads L Salmela Bioinformatics 26 (10), 1284-1290, 2010	151	2010
Accurate self-correction of errors in long reads using de Bruijn graphs L Salmela, R Walve, E Rivals, E Ukkonen Bioinformatics 33 (6), 799-806, 2017	148	2017
Multipattern string matching with q-grams L Salmela, J Tarhio, J Kytöjoki Journal of Experimental Algorithmics (JEA) 11, 1.1-es, 2007	121	2007
Fast scaffolding with small independent mixed integer programs L Salmela, V Mäkinen, N Välimäki, J Ylinen, E Ukkonen Bioinformatics 27 (23), 3259-3265, 2011	102	2011
Normalized N50 assembly metric using gap-restricted co-linear chaining V Mäkinen, L Salmela, J Ylinen BMC bioinformatics 13, 1-5, 2012	47	2012
Bit-parallel search algorithms for long patterns B Ďurian, H Peltola, L Salmela, J Tarhio Experimental Algorithms: 9th International Symposium, SEA 2010, Ischia …, 2010	44	2010
Flight‐induced changes in gene expression in the Glanville fritillary butterfly J Kvist, ALK Mattila, P Somervuo, V Ahola, P Koskinen, L Paulin, ... Molecular Ecology 24 (19), 4886-4900, 2015	42	2015
mpscan: Fast Localisation of Multiple Reads in Genomes E Rivals, L Salmela, P Kiiskinen, P Kalsi, J Tarhio Algorithms in Bioinformatics: 9th International Workshop, WABI 2009 …, 2009	37	2009
Tuning string matching for huge pattern sets J Kytöjoki, L Salmela, J Tarhio Combinatorial Pattern Matching: 14th Annual Symposium, CPM 2003 Morelia …, 2003	31	2003
Gap filling as exact path length problem L Salmela, K Sahlin, V Mäkinen, AI Tomescu Journal of Computational Biology 23 (5), 347-361, 2016	30	2016
String matching with alphabet sampling F Claude, G Navarro, H Peltola, L Salmela, J Tarhio Journal of Discrete Algorithms 11, 37-50, 2012	29	2012
Forbidden patterns J Fischer, T Gagie, T Kopelowitz, M Lewenstein, V Mäkinen, L Salmela, ... Latin American Symposium on Theoretical Informatics, 327-337, 2012	28	2012
Approximate Boyer-Moore string matching for small alphabets L Salmela, J Tarhio, P Kalsi Algorithmica 58, 591-609, 2010	22	2010
Fast parameterized matching with q-grams L Salmela, J Tarhio Journal of Discrete Algorithms 6 (3), 408-419, 2008	22	2008
Indexing variable length substrings for exact and approximate matching G Navarro, L Salmela International Symposium on String Processing and Information Retrieval, 214-221, 2009	21	2009
Optical map guided genome assembly M Leinonen, L Salmela BMC bioinformatics 21, 1-19, 2020	20	2020
Graphchainer: Colinear chaining for accurate alignment of long reads to variation graphs J Ma, M Cáceres, L Salmela, V Mäkinen, AI Tomescu bioRxiv, 2022	19*	2022

The system can't perform the operation now. Try again later.

Articles 1–20

Citations per year

Duplicate citations

Merged citations

Add co-authorsCo-authors

Follow

Cited by

Co-authors