Phil B. Pope
Phil B. Pope
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Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range
G Henderson, F Cox, S Ganesh, A Jonker, W Young, PH Janssen
Scientific reports 5 (1), 1-15, 2015
Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
PB Pope, SE Denman, M Jones, SG Tringe, K Barry, SA Malfatti, ...
Proceedings of the National Academy of Sciences 107 (33), 14793-14798, 2010
Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci
PB Pope, AK Mackenzie, I Gregor, W Smith, MA Sundset, AC McHardy, ...
PloS one 7 (6), e38571, 2012
Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children
E Avershina, O Storrø, T Øien, R Johnsen, P Pope, K Rudi
FEMS microbiology ecology 87 (1), 280-290, 2014
Characterization of microbial community structure during continuous anaerobic digestion of straw and cow manure
L Sun, PB Pope, VGH Eijsink, A Schnürer
Microbial biotechnology 8 (5), 815-827, 2015
Isolation of Succinivibrionaceae implicated in low methane emissions from Tammar wallabies
PB Pope, W Smith, SE Denman, SG Tringe, K Barry, P Hugenholtz, ...
Science 333 (6042), 646-648, 2011
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
Taxonomic metagenome sequence assignment with structured output models
KR Patil, P Haider, PB Pope, PJ Turnbaugh, M Morrison, T Scheffer, ...
Nature methods 8 (3), 191-192, 2011
Plant biomass degradation by gut microbiomes: more of the same or something new?
M Morrison, PB Pope, SE Denman, CS McSweeney
Current Opinion in Biotechnology 20 (3), 358-363, 2009
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research 45 (D1), gkw1030, 2016
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data
JA Frank, Y Pan, A Tooming-Klunderud, VGH Eijsink, AC McHardy, ...
Scientific reports 6 (1), 1-10, 2016
Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations
ÖCO Umu, JA Frank, JU Fangel, M Oostindjer, CS da Silva, EJ Bolhuis, ...
Microbiome 3 (1), 1-15, 2015
Do Rumen Bacteroidetes Utilize an Alternative Mechanism for Cellulose Degradation?
AE Naas, AK Mackenzie, J Mravec, J Schückel, WGT Willats, VGH Eijsink, ...
MBio 5 (4), e01401-14, 2014
The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans
SL La Rosa, ML Leth, L Michalak, ME Hansen, NA Pudlo, R Glowacki, ...
Nature communications 10 (1), 1-14, 2019
Metagenomic analysis of a freshwater toxic cyanobacteria bloom
PB Pope, BKC Patel
FEMS microbiology ecology 64 (1), 9-27, 2008
Stable core gut microbiota across the freshwater-to-saltwater transition for farmed Atlantic salmon
K Rudi, IL Angell, PB Pope, JO Vik, SR Sandve, LG Snipen
Applied and environmental microbiology 84 (2), e01974-17, 2018
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology, 1-11, 2020
The potential of class II bacteriocins to modify gut microbiota to improve host health
ÖCO Umu, C Bäuerl, M Oostindjer, PB Pope, PE Hernández, ...
PLoS One 11 (10), e0164036, 2016
Omics-based interpretation of synergism in a soil-derived cellulose-degrading microbial community
Y Zhou, PB Pope, S Li, B Wen, F Tan, S Cheng, J Chen, J Yang, F Liu, ...
Scientific reports 4 (1), 1-6, 2014
Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem
LM Solden, AE Naas, S Roux, RA Daly, WB Collins, CD Nicora, ...
Nature microbiology 3 (11), 1274-1284, 2018
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