Jie Shen
Cited by
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admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties
F Cheng, W Li, Y Zhou, J Shen, Z Wu, G Liu, PW Lee, Y Tang
Journal of Chemical Information and Modeling, 2012
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
SEQC Consortium
Nature biotechnology 32 (9), 903, 2014
An in silico skin absorption model for fragrance materials
J Shen, L Kromidas, T Schultz, S Bhatia
Food and chemical toxicology 74, 164-176, 2014
The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
Comparison of RNA-seq and microarray-based models for clinical endpoint prediction
W Zhang, Y Yu, F Hertwig, J Thierry-Mieg, W Zhang, D Thierry-Mieg, ...
Genome biology 16 (1), 1-12, 2015
Comparison of cramer classification between toxtree, the OECD QSAR toolbox and expert judgment
S Bhatia, T Schultz, D Roberts, J Shen, L Kromidas, AM Api
Regulatory Toxicology and Pharmacology 71 (1), 52-62, 2015
Role of acetylation and extracellular location of heat shock protein 90α in tumor cell invasion
Y Yang, R Rao, J Shen, Y Tang, W Fiskus, J Nechtman, P Atadja, K Bhalla
Cancer research 68 (12), 4833-4842, 2008
Estimation of ADME properties with substructure pattern recognition
J Shen, F Cheng, Y Xu, W Li, Y Tang
Journal of chemical information and modeling 50 (6), 1034-1041, 2010
CERAPP: collaborative estrogen receptor activity prediction project
K Mansouri, A Abdelaziz, A Rybacka, A Roncaglioni, A Tropsha, A Varnek, ...
Environmental health perspectives 124 (7), 1023-1033, 2016
Classification of cytochrome P450 inhibitors and noninhibitors using combined classifiers
F Cheng, Y Yu, J Shen, L Yang, W Li, G Liu, PW Lee, Y Tang
Journal of chemical information and modeling 51 (5), 996-1011, 2011
T4 report: Toward good read-across practice (GRAP) guidance
N Ball, MTD Cronin, J Shen, K Blackburn, ED Booth, M Bouhifd, E Donley, ...
Altex 33 (2), 149, 2016
Adverse drug events: database construction and in silico prediction
F Cheng, W Li, X Wang, Y Zhou, Z Wu, J Shen, Y Tang
Journal of chemical information and modeling 53 (4), 744-752, 2013
Exploring coumarin egress channels in human cytochrome P450 2A6 by random acceleration and steered molecular dynamics simulations
W Li, J Shen, G Liu, Y Tang, T Hoshino
Proteins: Structure, Function, and Bioinformatics 79 (1), 271-281, 2011
In Silico Assessment of Chemical Biodegradability
F Cheng, Y Ikenaga, Y Zhou, Y Yu, W Li, J Shen, Z Du, L Chen, C Xu, ...
Journal of Chemical Information and Modeling, 2012
In silico prediction of Tetrahymena pyriformis toxicity for diverse industrial chemicals with substructure pattern recognition and machine learning methods
F Cheng, J Shen, Y Yu, W Li, G Liu, PW Lee, Y Tang
Chemosphere 82 (11), 1636-1643, 2011
t4 report: Supporting read-across using biological data
H Zhu, M Bouhifd, N Kleinstreuer, ED Kroese, Z Liu, T Luechtefeld, ...
Altex 33 (2), 167, 2016
Homology modeling, molecular docking, and molecular dynamics simulations elucidated α-fetoprotein binding modes
J Shen, W Zhang, H Fang, R Perkins, W Tong, H Hong
BMC bioinformatics 14 (14), 1-11, 2013
Computational insights into the mechanism of ligand unbinding and selectivity of estrogen receptors
J Shen, W Li, G Liu, Y Tang, H Jiang
The Journal of Physical Chemistry B 113 (30), 10436-10444, 2009
EADB: an estrogenic activity database for assessing potential endocrine activity
J Shen, L Xu, H Fang, AM Richard, JD Bray, RS Judson, G Zhou, ...
toxicological sciences 135 (2), 277-291, 2013
Accuracy assessment of protein-based docking programs against RNA targets
Y Li, J Shen, X Sun, W Li, G Liu, Y Tang
Journal of chemical information and modeling 50 (6), 1134-1146, 2010
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