Christopher Illingworth
Christopher Illingworth
MRC Biostatistics Unit, University of Cambridge
Verified email at cam.ac.uk
Title
Cited by
Cited by
Year
High-definition reconstruction of clonal composition in cancer
A Fischer, I Vázquez-García, CJR Illingworth, V Mustonen
Cell reports 7 (5), 1740-1752, 2014
1632014
SARS-CoV-2 evolution during treatment of chronic infection
SA Kemp, DA Collier, RP Datir, IATM Ferreira, S Gayed, A Jahun, ...
Nature 592 (7853), 277-282, 2021
153*2021
Single-cell RNA-seq reveals hidden transcriptional variation in malaria parasites
AJ Reid, AM Talman, HM Bennett, AR Gomes, MJ Sanders, ...
Elife 7, e33105, 2018
1252018
High-resolution mapping of complex traits with a four-parent advanced intercross yeast population
FA Cubillos, L Parts, F Salinas, A Bergström, E Scovacricchi, A Zia, ...
Genetics 195 (3), 1141-1155, 2013
1082013
EMu: probabilistic inference of mutational processes and their localization in the cancer genome
A Fischer, CJR Illingworth, PJ Campbell, V Mustonen
Genome biology 14 (4), 1-10, 2013
932013
Criteria for confirming sequence periodicity identified by Fourier transform analysis: application to GCR2, a candidate plant GPCR?
CJR Illingworth, KE Parkes, CR Snell, PM Mullineaux, CA Reynolds
Biophysical chemistry 133 (1-3), 28-35, 2008
682008
Quantifying selection acting on a complex trait using allele frequency time series data
CJR Illingworth, L Parts, S Schiffels, G Liti, V Mustonen
Molecular biology and evolution 29 (4), 1187-1197, 2012
622012
Classical polarization in hybrid QM/MM methods
CJR Illingworth, SR Gooding, PJ Winn, GA Jones, GG Ferenczy, ...
The Journal of Physical Chemistry A 110 (20), 6487-6497, 2006
612006
In vitro selection of miltefosine resistance in promastigotes of Leishmania donovani from Nepal: genomic and metabolomic characterization
CD Shaw, J Lonchamp, T Downing, H Imamura, TM Freeman, JA Cotton, ...
Molecular Microbiology 99 (6), 1134-1148, 2016
542016
Computational studies of family A and family B GPCRs
S Vohra, SV Chintapalli, CJR Illingworth, PJ Reeves, PM Mullineaux, ...
Biochemical Society Transactions 35 (4), 749-754, 2007
492007
Many-body effects and simulations of potassium channels
CJ Illingworth, C Domene
Proceedings of the Royal Society A: Mathematical, Physical and Engineering …, 2009
482009
Distinguishing driver and passenger mutations in an evolutionary history categorized by interference
CJR Illingworth, V Mustonen
Genetics 189 (3), 989-1000, 2011
472011
Assessing the role of polarization in docking
CJR Illingworth, GM Morris, KEB Parkes, CR Snell, CA Reynolds
The Journal of Physical Chemistry A 112 (47), 12157-12163, 2008
462008
Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus
SR Doyle, CJR Illingworth, R Laing, DJ Bartley, E Redman, A Martinelli, ...
BMC genomics 20 (1), 1-19, 2019
40*2019
The effective rate of influenza reassortment is limited during human infection
AS Leonard, MT McClain, GJD Smith, DE Wentworth, RA Halpin, X Lin, ...
PLoS pathogens 13 (2), e1006203, 2017
402017
Addicted? Reduced host resistance in populations with defensive symbionts
J Martinez, R Cogni, C Cao, S Smith, CJR Illingworth, FM Jiggins
Proceedings of the Royal Society B: Biological Sciences 283 (1833), 20160778, 2016
362016
Identifying selection in the within-host evolution of influenza using viral sequence data
CJR Illingworth, A Fischer, V Mustonen
PLoS Comput Biol 10 (7), e1003755, 2014
362014
On the effective depth of viral sequence data
CJR Illingworth, S Roy, MA Beale, H Tutill, R Williams, J Breuer
Virus evolution 3 (2), vex030, 2017
312017
Components of selection in the evolution of the influenza virus: linkage effects beat inherent selection
CJR Illingworth, V Mustonen
PLoS Pathog 8 (12), e1003091, 2012
302012
Inferring genome-wide recombination landscapes from advanced intercross lines: application to yeast crosses
CJR Illingworth, L Parts, A Bergström, G Liti, V Mustonen
PloS one 8 (5), e62266, 2013
272013
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Articles 1–20