Nick Goldman

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Ziheng YangRA Fisher Professor of Statistical Genetics, University College LondonVerified email at ucl.ac.uk
Simon WhelanNo longer in academiaVerified email at swedbank.se
Ari LöytynojaPI, Institute of Biotechnology, University of HelsinkiVerified email at helsinki.fi
Nicola De MaioScientist in Molecular Evolution, European Bioinformatic Institute (EMBL-EBI), CambridgeVerified email at ebi.ac.uk
Tim MassinghamPrivateVerified email at portalbiotech.com
P. Lió, Pietro Lio, P. Lio, Pietro Liò, Pie...University of CambridgeVerified email at cam.ac.uk
Rasmus NielsenUC Berkeley, University of CopenhagenVerified email at bio.ku.dk
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of BioinformaticsVerified email at unil.ch
Jeffrey L. ThorneProfessor of Genetics and Statistics, North Carolina State UniversityVerified email at statgen.ncsu.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
Asif U TamuriUniversity College London (UCL)Verified email at ucl.ac.uk
Greg SlodkowiczThe Francis Crick InstituteVerified email at crick.ac.uk
Carolin KosiolReader in Bioinformatics, University of St AndrewsVerified email at st-andrews.ac.uk
Conor R. WalkerNew York Genome Center & Columbia UniversityVerified email at nygenome.org
Paul BertoneBrown UniversityVerified email at brown.edu
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzVerified email at soe.ucsc.edu
Fabio PardiResearch Fellow, CNRS, FranceVerified email at lirmm.fr
Allen RodrigoThe School of Biological Sciences, The University of AucklandVerified email at auckland.ac.nz
Stefan WashietlComputer Science and Artificial Intelligence Lab, MITVerified email at mit.edu
Emily LeproustTwist BioscienceVerified email at twistbioscience.com

Nick Goldman

EMBL-European Bioinformatics Institute

Verified email at ebi.ac.uk - Homepage

genome analysis evolution EMBL-EBI-Research-Group


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Initial sequencing and comparative analysis of the mouse genome AT Chinwalla, LL Cook, KD Delehaunty, GA Fewell, LA Fulton, RS Fulton, ... Nature 420 (6915), 520-562, 2002	8331*	2002
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	5831	2007
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach S Whelan, N Goldman Molecular Biology and Evolution 18 (5), 691-699, 2001	2887	2001
Codon-substitution models for heterogeneous selection pressure at amino acid sites Z Yang, R Nielsen, N Goldman, AMK Pedersen Genetics 155 (1), 431-449, 2000	2560	2000
A codon-based model of nucleotide substitution for protein-coding DNA sequences. N Goldman, Z Yang Molecular Biology and Evolution 11 (5), 725-736, 1994	2323	1994
Likelihood-based tests of topologies in phylogenetics N Goldman, JP Anderson, AG Rodrigo Systematic Biology 49 (4), 652-670, 2000	1215	2000
A high-resolution map of human evolutionary constraint using 29 mammals K Lindblad-Toh, M Garber, O Zuk, MF Lin, BJ Parker, S Washietl, ... Nature 478 (7370), 476-482, 2011	1193	2011
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... Nature 494 (7435), 77-80, 2013	1077	2013
An algorithm for progressive multiple alignment of sequences with insertions A Löytynoja, N Goldman Proceedings of the National Academy of Sciences of the United States of …, 2005	1008	2005
Statistical tests of models of DNA substitution N Goldman Journal of Molecular Evolution 36 (2), 182-198, 1993	871	1993
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis A Löytynoja, N Goldman Science 320 (5883), 1632-1635, 2008	852	2008
Insights into hominid evolution from the gorilla genome sequence A Scally, JY Dutheil, LDW Hillier, GE Jordan, I Goodhead, J Herrero, ... Nature 483 (7388), 169-175, 2012	792	2012
Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites WSW Wong, Z Yang, N Goldman, R Nielsen Genetics 168 (2), 1041-1051, 2004	635	2004
Systematic evaluation of spliced alignment programs for RNA-seq data PG Engstrom, T Steijger, B Sipos, GR Grant, A Kahles, G Raetsch, ... NATURE METHODS 10 (12), 1185-+, 2013	561	2013
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation. Z Yang, N Goldman, A Friday Molecular biology and evolution 11 (2), 316-324, 1994	519	1994
Molecular phylogenetics: state-of-the-art methods for looking into the past S Whelan, P Lio, N Goldman TRENDS in Genetics 17 (5), 262-272, 2001	517	2001
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser A Löytynoja, N Goldman BMC bioinformatics 11 (1), 579, 2010	440	2010
Models of molecular evolution and phylogeny P Liò, N Goldman Genome research 8 (12), 1233-1244, 1998	438	1998
Genome sequencing of normal cells reveals developmental lineages and mutational processes S Behjati, M Huch, R van Boxtel, W Karthaus, DC Wedge, AU Tamuri, ... Nature 513 (7518), 422-425, 2014	355	2014
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution RC Hardison, KM Roskin, S Yang, M Diekhans, WJ Kent, R Weber, ... Genome research 13 (1), 13-26, 2003	352	2003

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