Sridhar Hannenhalli
Sridhar Hannenhalli
Senior Investigator, Cancer Data Science Lab, National Cancer Institute. NIH
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
The sequence of the human genome
JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ...
science 291 (5507), 1304-1351, 2001
180742001
Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals
S Hannenhalli, PA Pevzner
Journal of the ACM (JACM) 46 (1), 1-27, 1999
11241999
The evolution of Fox genes and their role in development and disease
S Hannenhalli, KH Kaestner
Nature Reviews Genetics 10 (4), 233-240, 2009
5612009
Genome-wide analysis of retroviral DNA integration
F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ...
Nature reviews microbiology 3 (11), 848-858, 2005
4882005
Transforming men into mice (polynomial algorithm for genomic distance problem)
S Hannenhalli, PA Pevzner
Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995
4521995
Retroviral DNA integration: viral and cellular determinants of target-site selection
MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ...
PLoS pathog 2 (6), e60, 2006
4222006
Analysis and prediction of functional sub-types from protein sequence alignments
SS Hannenhalli, RB Russell
Journal of molecular biology 303 (1), 61-76, 2000
3102000
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ...
Journal of virology 79 (11), 6610-6619, 2005
3022005
Whole-genome shotgun assembly and comparison of human genome assemblies
S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ...
Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004
2452004
Selection of target sites for mobile DNA integration in the human genome
C Berry, S Hannenhalli, J Leipzig, FD Bushman
PLoS Comput Biol 2 (11), e157, 2006
2312006
Polynomial-time algorithm for computing translocation distance between genomes
S Hannenhalli
Discrete applied mathematics 71 (1-3), 137-151, 1996
2311996
1.375-approximation algorithm for sorting by reversals
P Berman, S Hannenhalli, M Karpinski
European Symposium on Algorithms, 200-210, 2002
2302002
Fast sorting by reversal
P Berman, S Hannenhalli
Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996
1971996
CLINICAL PERSPECTIVE
S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ...
Circulation 114 (12), 1269-1276, 2006
1792006
Genome sequence comparison and scenarios for gene rearrangements: A test case
S Hannenhalli, C Chappey, EV Koonin, PA Pevzner
Genomics 30 (2), 299-311, 1995
1761995
Promoter prediction in the human genome
S Hannenhalli, S Levy
Bioinformatics 17 (suppl_1), S90-S96, 2001
1552001
Enrichment of regulatory signals in conserved non-coding genomic sequence
S Levy, S Hannenhalli, C Workman
Bioinformatics 17 (10), 871-877, 2001
1522001
Eukaryotic transcription factor binding sites—modeling and integrative search methods
S Hannenhalli
Bioinformatics 24 (11), 1325-1331, 2008
1422008
Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model
R Agarwala, S Batzoglou, V Dančik, SE Decatur, S Hannenhalli, M Farach, ...
Journal of Computational Biology 4 (3), 275-296, 1997
1331997
Identification of transcription factor binding sites in the human genome sequence
S Levy, S Hannenhalli
Mammalian Genome 13 (9), 510-514, 2002
1322002
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